RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA1034994" and tax_clade = "core chlorophytes"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • core chlorophytes · 2 ✖

bioproject 1

  • PRJNA1034994 · 2 ✖

analysis 1

  • blastn · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9935677 9935677 PRJNA1034994_P_NODE_5168_length_267_cov_1.283505_g5084_i0 PRJNA1034994 5168 267 1.283505 3.42695835 Chlorophyceae 3166 Plants Plants 488 1.5699999999999998e-133   NTclustered gi|586587043|gb|KC817000.1| 332209 g5084 i0 99.625 99.749063670412 267 1 100 0 1 267 391 125 Chlorosarcinopsis arenicola strain UTEX 1697 28S ribosomal RNA gene, partial sequence blastn 26633 488 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlorosarcinales Chlorosarcinaceae Chlorosarcinopsis Chlorosarcinopsis arenicola
16745186 16745186 PRJNA1034994_P_NODE_5514_length_263_cov_1.515789_g5430_i0 PRJNA1034994 5514 263 1.515789 3.98652507 Sykidion marinum 44573 Plants Plants 222 1.73e-53   NTclustered gi|1197510977|ref|NC_034710.1| 44573 g5430 i0 82.422 16.5475285171103 256 43 97 2 9 263 51925 52179 Pseudoneochloris marina culture UTEX:1445 chloroplast, complete genome blastn 4352 222 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Ulvophyceae Sykidiales Sykidiacaeae Sykidion Sykidion marinum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;