RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA1034994" and tax_clade = "Sar"

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tax_superkingdom 1

tax_phylum 1

tax_clade 1

bioproject 1

  • PRJNA1034994 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
15035207 15035207 PRJNA1034994_P_NODE_2432_length_330_cov_2.167315_g2348_i0 PRJNA1034994 2432 330 2.167315 7.1521395 Colpodella 177938 SAR_Eukaryotes SAR_Eukaryotes 610 4.09e-170   NTclustered gi|1463934533|gb|MH208621.1| 665140 g2348 i0 100 92.6181818181818 330 0 100 0 1 330 535 864 Colpodellidae sp. HEP voucher Colp_HEP_I219 18S ribosomal RNA gene, partial sequence blastn 30564 610 1 Eukaryota Sar         Colpodellaceae   Colpodellidae sp. HEP
19294051 19294051 PRJNA1034994_P_NODE_416_length_830_cov_1.949802_g343_i0 PRJNA1034994 416 830 1.949802 16.1833566 Colpodella angusta 1541798 SAR_Eukaryotes SAR_Eukaryotes 669 0   NTclustered gi|972268869|gb|KU159286.1| 1541798 g343 i0 84.495 90.2084337349398 703 81 88 18 152 830 4618 3920 Colpodella angusta 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 74873 669 1 Eukaryota Sar         Colpodellaceae Colpodella Colpodella angusta
21409594 21409594 PRJNA1034994_P_NODE_5297_length_265_cov_1.604167_g5213_i0 PRJNA1034994 5297 265 1.604167 4.25104255 Phytophthora 4783 SAR_Eukaryotes SAR_Eukaryotes 342 1.2799999999999999e-89   NTclustered gi|403181325|gb|JN635247.1| 4795 g5213 i0 90.335 101.837735849057 269 15 100 7 1 265 313 52 Phytophthora megakarya isolate WPC1664B492 18S ribosomal RNA gene, partial sequence blastn 26987 344 0.994186046511628 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora megakarya

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;