RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA1034994" and tax_clade = "Amoebozoa"

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tax_superkingdom 1

tax_phylum 1

tax_clade 1

  • Amoebozoa · 2 ✖

bioproject 1

  • PRJNA1034994 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
20569426 20569426 PRJNA1034994_P_NODE_6597_length_251_cov_1.640449_g6513_i0 PRJNA1034994 6597 251 1.640449 4.11752699 Protophysarum sp. PV64 1215983 Evosea other_Eukaryota 453 5.34e-123   NTclustered gi|399764200|gb|JQ271711.1| 1215983 g6513 i0 99.203 98.6772908366534 251 2 100 0 1 251 973 1223 Protophysarum sp. PV64 18S ribosomal RNA gene, partial sequence blastn 24768 453 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Physariida Physaraceae Protophysarum Protophysarum sp. PV64
24394328 24394328 PRJNA1034994_P_NODE_4100_length_279_cov_2.111650_g4016_i0 PRJNA1034994 4100 279 2.11165 5.8915035 Protophysarum sp. PV64 1215983 Evosea other_Eukaryota 466 7.74e-127   NTclustered gi|399764200|gb|JQ271711.1| 1215983 g4016 i0 96.774 78.6021505376344 279 9 100 0 1 279 875 597 Protophysarum sp. PV64 18S ribosomal RNA gene, partial sequence blastn 21930 466 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Physariida Physaraceae Protophysarum Protophysarum sp. PV64

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;