RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA1032461" and tax_phylum = "Myxococcota"

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tax_superkingdom 1

tax_phylum 1

  • Myxococcota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1032461 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7819700 7819700 PRJNA1032461_S_NODE_15467_length_168_cov_0.873950_g15369_i0 PRJNA1032461 15467 168 0.87395 1.468236 Sorangium cellulosum 56 Bacteria Bacteria 99 1.79e-16   NTclustered gi|1338588479|gb|CP012673.1| 56 g15369 i0 88.095 27.1547619047619 84 8 49 2 1 83 842366 842284 Sorangium cellulosum strain So ce26 chromosome, complete genome blastn 4562 99 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae Sorangium Sorangium cellulosum
10370266 10370266 PRJNA1032461_S_NODE_129_length_1113_cov_10.936090_g80_i0 PRJNA1032461 129 1113 10.93609 121.7186817 Labilithrix luteola 1391654 Bacteria Bacteria 1628 0   NTclustered gi|913610804|gb|CP012333.1| 1391654 g80 i0 93.042 166.339622641509 1121 67 100 9 1 1113 3941786 3942903 Labilithrix luteola strain DSM 27648, complete genome blastn 185136 1628 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Labilitrichaceae Labilithrix Labilithrix luteola
10370269 10370269 PRJNA1032461_S_NODE_13329_length_172_cov_2.536585_g13231_i0 PRJNA1032461 13329 172 2.536585 4.3629262 Labilithrix luteola 1391654 Bacteria Bacteria 279 6.08e-71   NTclustered gi|913610804|gb|CP012333.1| 1391654 g13231 i0 95.93 266.354651162791 172 7 100 0 1 172 3942261 3942090 Labilithrix luteola strain DSM 27648, complete genome blastn 45813 279 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Labilitrichaceae Labilithrix Labilithrix luteola
23959624 23959624 PRJNA1032461_S_NODE_6759_length_228_cov_1.972067_g6661_i0 PRJNA1032461 6759 228 1.972067 4.49631276 Myxococcia 32015 Bacteria Bacteria 279 8.56e-71   NTclustered gi|913610804|gb|CP012333.1| 1391654 g6661 i0 88.696 142.34649122807 230 24 100 1 1 228 3943120 3943349 Labilithrix luteola strain DSM 27648, complete genome blastn 32455 279 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Labilitrichaceae Labilithrix Labilithrix luteola

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;