RNAquarium Metadata Server
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contig_metadata

7 rows where analysis = "blastn", bioproject = "PRJNA1032461" and tax_clade = "core chlorophytes"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • core chlorophytes · 7 ✖

bioproject 1

  • PRJNA1032461 · 7 ✖

analysis 1

  • blastn · 7 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2282484 2282484 PRJNA1032461_S_NODE_5862_length_240_cov_19.979058_g5764_i0 PRJNA1032461 5862 240 19.979058 47.9497392 Eukaryota 2759 Plants Plants 351 1.9e-92   NTclustered gi|1201359270|gb|MF040792.1| 3078 g5764 i0 100 103.333333333333 190 0 100 0 1 190 357 168 Auxenochlorella pyrenoidosa isolate HIT9 18S ribosomal RNA gene, partial sequence blastn 24800 351 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Auxenochlorella Auxenochlorella pyrenoidosa
5269970 5269970 PRJNA1032461_S_NODE_5825_length_241_cov_3.057292_g5727_i0 PRJNA1032461 5825 241 3.057292 7.36807372 Trebouxia sp. SL0000003 3350044 Plants Plants 58.4 4.66e-4   NTclustered gi|2917929625|emb|OZ234913.1| 3350044 g5727 i0 100 0.257261410788382 31 0 13 0 6 36 2994134 2994164 Trebouxia sp. SL0000003 genome assembly, chromosome: 8 blastn 62 58.4 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Trebouxia Trebouxia sp. SL0000003
15035013 15035013 PRJNA1032461_S_NODE_9212_length_201_cov_13.407895_g9114_i0 PRJNA1032461 9212 201 13.407895 26.94986895 Eukaryota 2759 Plants Plants 361 2.5599999999999998e-95   NTclustered gi|1898545223|gb|MT951391.1| 3078 g9114 i0 99.005 99.9950248756219 201 2 100 0 1 201 896 1096 Auxenochlorella pyrenoidosa strain Ozcimen001 small subunit ribosomal RNA gene, partial sequence blastn 20099 364 0.991758241758242 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Auxenochlorella Auxenochlorella pyrenoidosa
18858695 18858695 PRJNA1032461_S_NODE_10035_length_194_cov_23.779310_g9937_i0 PRJNA1032461 10035 194 23.77931 46.1318614 Eukaryota 2759 Plants Plants 359 8.809999999999999e-95   NTclustered gi|1898545223|gb|MT951391.1| 3078 g9937 i0 100 99.9587628865979 194 0 100 0 1 194 1397 1590 Auxenochlorella pyrenoidosa strain Ozcimen001 small subunit ribosomal RNA gene, partial sequence blastn 19392 359 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Auxenochlorella Auxenochlorella pyrenoidosa
20133490 20133490 PRJNA1032461_S_NODE_13136_length_173_cov_23.862903_g13038_i0 PRJNA1032461 13136 173 23.862903 41.28282219 Eukaryota 2759 Plants Plants 283 4.729999999999999e-72   NTclustered gi|1255307117|gb|KY198301.1| 3067 g13038 i0 100 79.0809248554913 153 0 88 0 1 153 387 235 Volvox carteri isolate EMBOSS_001 internal transcribed spacer 1, partial sequence; 5.8S ribosomal RNA gene and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 13681 283 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Volvocaceae Volvox Volvox carteri
21409113 21409113 PRJNA1032461_S_NODE_11817_length_181_cov_24.393939_g11719_i0 PRJNA1032461 11817 181 24.393939 44.15302959 Eukaryota 2759 Plants Plants 327 2.2799999999999996e-85   NTclustered gi|1898545223|gb|MT951391.1| 3078 g11719 i0 99.444 99.4475138121547 180 1 99 0 1 180 1235 1414 Auxenochlorella pyrenoidosa strain Ozcimen001 small subunit ribosomal RNA gene, partial sequence blastn 18000 327 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Auxenochlorella Auxenochlorella pyrenoidosa
25233387 25233387 PRJNA1032461_S_NODE_2140_length_369_cov_21.578125_g2042_i0 PRJNA1032461 2140 369 21.578125 79.62328125 Eukaryota 2759 Plants Plants 665 0   NTclustered gi|1898545223|gb|MT951391.1| 3078 g2042 i0 99.187 99.9728997289973 369 3 100 0 1 369 924 556 Auxenochlorella pyrenoidosa strain Ozcimen001 small subunit ribosomal RNA gene, partial sequence blastn 36890 671 0.991058122205663 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Auxenochlorella Auxenochlorella pyrenoidosa

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;