RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA1032461" and tax_clade = "Sar"

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tax_phylum 2

tax_superkingdom 1

tax_clade 1

bioproject 1

  • PRJNA1032461 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9094665 9094665 PRJNA1032461_S_NODE_7788_length_216_cov_0.874251_g7690_i0 PRJNA1032461 7788 216 0.874251 1.88838216 Heteromita globosa 45107 SAR_Eukaryotes SAR_Eukaryotes 281 2.23e-71   NTclustered gi|238617605|gb|FJ973380.1| 45107 g7690 i0 90.278 97.5787037037037 216 20 100 1 1 216 1410 1196 Heteromita globosa strain ATCC 50780 28S ribosomal RNA gene, partial sequence blastn 21077 281 1 Eukaryota Sar   Cercozoa   Cercomonadida Heteromitidae Heteromita Heteromita globosa
18018923 18018923 PRJNA1032461_S_NODE_4795_length_263_cov_1.644860_g4697_i0 PRJNA1032461 4795 263 1.64486 4.3259818 Plasmodium gonderi 77519 SAR_Eukaryotes SAR_Eukaryotes 187 6.309999999999998e-43   NTclustered gi|1620948881|ref|XM_028686504.1| 77519 g4697 i0 83.582 22.2281368821293 201 32 76 1 6 205 103 303 Plasmodium gonderi heat shock 70 kDa protein (PGO_051260), partial mRNA blastn 5846 187 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium gonderi

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;