RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA1032461" and tax_clade = "PVC group"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • PVC group · 3 ✖

bioproject 1

  • PRJNA1032461 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3993651 3993651 PRJNA1032461_S_NODE_9424_length_199_cov_4.640000_g9326_i0 PRJNA1032461 9424 199 4.64 9.2336 uncultured Planctomycetaceae bacterium 100233 Bacteria Bacteria 250 5.71e-62   NTclustered gi|2874254106|emb|OY970189.1| 100233 g9326 i0 90.526 233.35175879397 190 17 95 1 9 197 4317089 4317278 MAG: uncultured Planctomycetaceae bacterium isolate MFD09603.bin.2.127 genome assembly, chromosome: 1 blastn 46437 250 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Planctomycetales Planctomycetaceae   uncultured Planctomycetaceae bacterium
6545109 6545109 PRJNA1032461_S_NODE_16646_length_167_cov_0.881356_g16548_i0 PRJNA1032461 16646 167 0.881356 1.47186452 uncultured Phycisphaerales bacterium 904075 Bacteria Bacteria 150 4.83e-32   NTclustered gi|2874253847|emb|OY969903.1| 904075 g16548 i0 98.81 16.0239520958084 84 1 50 0 71 154 388132 388215 MAG: uncultured Phycisphaerales bacterium isolate MFD01213.bin.c.1 genome assembly, chromosome: 1 blastn 2676 150 1 Bacteria PVC group Pseudomonadati Planctomycetota Phycisphaerae Phycisphaerales     uncultured Phycisphaerales bacterium
10370295 10370295 PRJNA1032461_S_NODE_16189_length_167_cov_0.881356_g16091_i0 PRJNA1032461 16189 167 0.881356 1.47186452 Planctomyces sp. SH-PL14 1632864 Bacteria Bacteria 281 1.64e-71   NTclustered gi|1015434452|gb|CP011270.1| 1632864 g16091 i0 97.006 201.556886227545 167 5 100 0 1 167 4957069 4957235 Planctomyces sp. SH-PL14, complete genome blastn 33660 281 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Planctomycetales Planctomycetaceae Planctomyces Planctomyces sp. SH-PL14

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;