RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJNA1031674" and tax_phylum = "Gemmatimonadota"

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tax_superkingdom 1

tax_phylum 1

  • Gemmatimonadota · 6 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1031674 · 6 ✖

analysis 1

  • blastn · 6 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
166548 166548 PRJNA1031674_P_NODE_12641_length_285_cov_0.886792_g12430_i0 PRJNA1031674 12641 285 0.886792 2.5273572 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 196 1.15e-45   NTclustered gi|2874253978|emb|OY970303.1| 412054 g12430 i0 80.303 3.71578947368421 264 48 92 4 1 262 7523335 7523074 MAG: uncultured Gemmatimonadales bacterium isolate MFD01275.bin.c.12 genome assembly, chromosome: 1 blastn 1059 196 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium
5269571 5269571 PRJNA1031674_P_NODE_21905_length_251_cov_1.719101_g21694_i0 PRJNA1031674 21905 251 1.719101 4.31494351 Gemmatimonas groenlandica 2732249 Bacteria Bacteria 154 6.06e-33   NTclustered gi|1839994010|gb|CP053085.1| 2732249 g21694 i0 78.295 55.8804780876494 258 42 100 13 1 251 1103161 1102911 Gemmatimonas groenlandica strain TET16 chromosome, complete genome blastn 14026 154 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatimonas Gemmatimonas groenlandica
7819169 7819169 PRJNA1031674_P_NODE_10187_length_295_cov_1.387387_g9976_i0 PRJNA1031674 10187 295 1.387387 4.09279165 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 363 1.1099999999999999e-95   NTclustered gi|2874253789|emb|OY969773.1| 412054 g9976 i0 88.851 23.5152542372881 296 31 100 2 1 295 421895 422189 MAG: uncultured Gemmatimonadales bacterium isolate MFD04580.bin.2.49 genome assembly, chromosome: 1 blastn 6937 363 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium
14195325 14195325 PRJNA1031674_P_NODE_21912_length_251_cov_1.702247_g21701_i0 PRJNA1031674 21912 251 1.702247 4.27263997 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 414 2.52e-111   NTclustered gi|2874253789|emb|OY969773.1| 412054 g21701 i0 96.414 130.828685258964 251 9 100 0 1 251 422765 423015 MAG: uncultured Gemmatimonadales bacterium isolate MFD04580.bin.2.49 genome assembly, chromosome: 1 blastn 32838 414 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium
18018526 18018526 PRJNA1031674_P_NODE_19875_length_259_cov_1.747312_g19664_i0 PRJNA1031674 19875 259 1.747312 4.52553808 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 207 4.76e-49   NTclustered gi|2874253938|emb|OY970263.1| 412054 g19664 i0 81.679 6.44787644787645 262 36 98 9 6 259 802589 802846 MAG: uncultured Gemmatimonadales bacterium isolate MFD02416.bin.2.26 genome assembly, chromosome: 1 blastn 1670 207 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium
20567801 20567801 PRJNA1031674_P_NODE_18997_length_263_cov_1.268421_g18786_i0 PRJNA1031674 18997 263 1.268421 3.33594723 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 363 9.769999999999999e-96   NTclustered gi|2874253728|emb|OY969570.1| 412054 g18786 i0 91.667 454.669201520913 264 19 100 2 1 263 173507 173768 MAG: uncultured Gemmatimonadales bacterium isolate MFD02840.bin.c.1 genome assembly, chromosome: 1 blastn 119578 363 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;