RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA1031674" and tax_phylum = "Armatimonadota"

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tax_superkingdom 1

tax_phylum 1

  • Armatimonadota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1031674 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
10369852 10369852 PRJNA1031674_P_NODE_16109_length_273_cov_1.780000_g15898_i0 PRJNA1031674 16109 273 1.78 4.8594 Capsulimonas corticalis 2219043 Bacteria Bacteria 93.5 1.48e-14   NTclustered gi|2240447379|dbj|AP025739.1| 2219043 g15898 i0 91.304 16.2197802197802 69 4 25 2 188 255 594077 594144 Capsulimonas corticalis AX-7 DNA, complete genome blastn 4428 93.5 1 Bacteria   Bacillati Armatimonadota Armatimonadia Capsulimonadales Capsulimonadaceae Capsulimonas Capsulimonas corticalis
17584679 17584679 PRJNA1031674_P_NODE_20034_length_258_cov_5.389189_g19823_i0 PRJNA1031674 20034 258 5.389189 13.90410762 Chthonomonas 1077265 Bacteria Bacteria 254 6e-63   NTclustered gi|526641997|ref|NR_103994.1| 454171 g19823 i0 87.671 154.910852713178 219 26 84 1 2 219 2574 2792 Chthonomonas calidirosea strain T49 23S ribosomal RNA gene, complete sequence blastn 39967 254 1 Bacteria   Bacillati Armatimonadota Chthonomonadia Chthonomonadales Chthonomonadaceae Chthonomonas Chthonomonas calidirosea

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;