RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA1031674" and tax_clade = "Amoebozoa"

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tax_superkingdom 1

tax_phylum 1

tax_clade 1

  • Amoebozoa · 4 ✖

bioproject 1

  • PRJNA1031674 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2717203 2717203 PRJNA1031674_P_NODE_23303_length_249_cov_0.875000_g23092_i0 PRJNA1031674 23303 249 0.875 2.17875 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 289 1.58e-73   NTclustered gi|300078498|gb|GU001160.1| 5755 g23092 i0 89.157 48.1244979919679 249 4 100 13 1 249 5583 5358 Acanthamoeba castellanii 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 11983 289 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
10369941 10369941 PRJNA1031674_P_NODE_21569_length_252_cov_2.474860_g21358_i0 PRJNA1031674 21569 252 2.47486 6.2366472 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 193 1.29e-44   NTclustered gi|300078498|gb|GU001160.1| 5755 g21358 i0 89.157 40.5476190476191 166 3 65 10 90 252 7681 7528 Acanthamoeba castellanii 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 10218 193 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
15469420 15469420 PRJNA1031674_P_NODE_14673_length_278_cov_1.507317_g14462_i0 PRJNA1031674 14673 278 1.507317 4.19034126 Acanthamoeba jacobsi 238784 Discosea other_Eukaryota 477 3.559999999999999e-130   NTclustered gi|1135510002|gb|KY513796.1| 238784 g14462 i0 97.842 100.223021582734 278 3 100 3 1 278 2439 2713 Acanthamoeba jacobsi isolate Pool-4-37 small subunit ribosomal RNA gene, partial sequence blastn 27862 477 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba jacobsi
16743860 16743860 PRJNA1031674_P_NODE_8774_length_310_cov_2.097046_g8563_i0 PRJNA1031674 8774 310 2.097046 6.5008426 Vannella septentrionalis 197531 Discosea other_Eukaryota 381 3.249999999999999e-101   NTclustered gi|300078499|gb|GU001161.1| 197531 g8563 i0 88.785 60.5290322580645 321 23 100 13 1 310 3758 3440 Vannella septentrionalis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 18764 381 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Vannella Vannella septentrionalis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;