RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA1028258" and tax_phylum = "Vulcanimicrobiota"

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tax_superkingdom 1

tax_phylum 1

  • Vulcanimicrobiota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1028258 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1440556 1440556 PRJNA1028258_P_NODE_91862_length_269_cov_1.620000_g91299_i0 PRJNA1028258 91862 269 1.62 4.3578 Vulcanimicrobiota bacterium 3107663 Bacteria Bacteria 283 8.03e-72   NTclustered gi|2202949261|emb|OV972893.1| 3107663 g91299 i0 85.874 806.423791821561 269 34 99 4 1 267 5033253 5033519 MAG: Candidatus Eremiobacteraeota bacterium isolate E.malaspinii_MAG_MP1648_PBLIHF genome assembly, chromosome: 1 blastn 216928 283 1 Bacteria   Bacillati Vulcanimicrobiota         Vulcanimicrobiota bacterium
15468668 15468668 PRJNA1028258_P_NODE_94793_length_266_cov_1.431472_g94230_i0 PRJNA1028258 94793 266 1.431472 3.80771552 Vulcanimicrobiota bacterium 3107663 Bacteria Bacteria 137 6.53e-28   NTclustered gi|2202949261|emb|OV972893.1| 3107663 g94230 i0 81.707 1.1203007518797 164 30 65 0 30 193 7681783 7681620 MAG: Candidatus Eremiobacteraeota bacterium isolate E.malaspinii_MAG_MP1648_PBLIHF genome assembly, chromosome: 1 blastn 298 137 1 Bacteria   Bacillati Vulcanimicrobiota         Vulcanimicrobiota bacterium
15468766 15468766 PRJNA1028258_P_NODE_99513_length_261_cov_1.609375_g98950_i0 PRJNA1028258 99513 261 1.609375 4.20046875 Vulcanimicrobium alpinum 3016050 Bacteria Bacteria 52.8 0.024   NTclustered gi|2416250577|dbj|AP025523.1| 3016050 g98950 i0 100 0.10727969348659 28 0 11 0 216 243 3366498 3366525 Vulcanimicrobium alpinum WC8-2 DNA, complete genome blastn 28 52.8 1 Bacteria   Bacillati Vulcanimicrobiota Vulcanimicrobiia Vulcanimicrobiales Vulcanimicrobiaceae Vulcanimicrobium Vulcanimicrobium alpinum
19289576 19289576 PRJNA1028258_P_NODE_15376_length_648_cov_2.305699_g14847_i0 PRJNA1028258 15376 648 2.305699 14.94092952 Vulcanimicrobiota bacterium 3107663 Bacteria Bacteria 741 0   NTclustered gi|2202949261|emb|OV972893.1| 3107663 g14847 i0 87.5 839.172839506173 648 73 99 8 5 648 5032721 5032078 MAG: Candidatus Eremiobacteraeota bacterium isolate E.malaspinii_MAG_MP1648_PBLIHF genome assembly, chromosome: 1 blastn 543784 741 1 Bacteria   Bacillati Vulcanimicrobiota         Vulcanimicrobiota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;