RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA1028258" and tax_phylum = "Preaxostyla"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Preaxostyla · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA1028258 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7815938 7815938 PRJNA1028258_P_NODE_125287_length_240_cov_1.292398_g124724_i0 PRJNA1028258 125287 240 1.292398 3.1017552 Monocercomonoides exilis 2049356 Preaxostyla other_Eukaryota 52.8 0.022   NTclustered gi|2794964238|ref|XM_067865056.1| 2049356 g124724 i0 100 0.116666666666667 28 0 12 0 10 37 1331 1358 Monocercomonoides exilis uncharacterized protein (MONOS_12437fu12438), mRNA blastn 28 52.8 1 Eukaryota Metamonada   Preaxostyla   Oxymonadida Polymastigidae Monocercomonoides Monocercomonoides exilis
11643237 11643237 PRJNA1028258_P_NODE_34610_length_431_cov_0.994475_g34047_i0 PRJNA1028258 34610 431 0.994475 4.28618725 Trimastix marina 137419 Preaxostyla other_Eukaryota 470 9.69e-128   NTclustered gi|84105378|gb|DQ295217.1| 137419 g34047 i0 87.05 92.046403712297 417 52 97 2 16 431 5 420 Trimastix marina alpha tubulin 1 gene, partial cds blastn 39672 470 1 Eukaryota Metamonada   Preaxostyla     Trimastigidae Trimastix Trimastix marina

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;