RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA1028258" and tax_phylum = "Olpidiomycota"

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tax_superkingdom 1

tax_phylum 1

  • Olpidiomycota · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1028258 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
14194502 14194502 PRJNA1028258_P_NODE_95072_length_266_cov_1.106599_g94509_i0 PRJNA1028258 95072 266 1.106599 2.94355334 Olpidium bornovanus 278681 Fungi Fungi 75 5.19e-9   NTclustered gi|358030883|dbj|AB609175.1| 278681 g94509 i0 95.745 0.176691729323308 47 1 18 1 217 263 185 230 Olpidium bornovanus EF2 mRNA for translation elongation factor 2, partial cds, specimen_voucher: UBC:UBC F19785, clone: 2 blastn 47 75 1 Eukaryota Opisthokonta Fungi Olpidiomycota Olpidiomycetes Olpidiales Olpidiaceae Olpidium Olpidium bornovanus
20564480 20564480 PRJNA1028258_P_NODE_121917_length_243_cov_0.844828_g121354_i0 PRJNA1028258 121917 243 0.844828 2.05293204 Olpidium brassicae 70189 Fungi Fungi 261 3.34e-65   NTclustered gi|358030887|dbj|AB609177.1| 70189 g121354 i0 86.008 75.1316872427983 243 34 100 0 1 243 1732 1490 Olpidium brassicae EF2 mRNA for translation elongation factor 2, partial cds, specimen_voucher: UBC:UBC F19784, clone: 2 blastn 18257 261 1 Eukaryota Opisthokonta Fungi Olpidiomycota Olpidiomycetes Olpidiales Olpidiaceae Olpidium Olpidium brassicae
24392002 24392002 PRJNA1028258_P_NODE_9840_length_801_cov_2.728142_g9381_i0 PRJNA1028258 9840 801 2.728142 21.85241742 Olpidium bornovanus 278681 Fungi Fungi 448 8.779999999999999e-121   NTclustered gi|358030883|dbj|AB609175.1| 278681 g9381 i0 79.274 63.7215980024969 661 121 82 13 1 656 650 1 Olpidium bornovanus EF2 mRNA for translation elongation factor 2, partial cds, specimen_voucher: UBC:UBC F19785, clone: 2 blastn 51041 448 1 Eukaryota Opisthokonta Fungi Olpidiomycota Olpidiomycetes Olpidiales Olpidiaceae Olpidium Olpidium bornovanus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;