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contig_metadata

23 rows where analysis = "blastn", bioproject = "PRJNA1028258" and tax_phylum = "Nematoda"

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tax_superkingdom 1

tax_phylum 1

  • Nematoda · 23 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1028258 · 23 ✖

analysis 1

  • blastn · 23 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
163622 163622 PRJNA1028258_P_NODE_142901_length_233_cov_0.865854_g142338_i0 PRJNA1028258 142901 233 0.865854 2.01743982 Rhabditidoides sp. RS5443 669111 Nematoda Nematoda 254 5.33e-63   NTclustered gi|256709233|gb|GQ422269.1| 669111 g142338 i0 86.784 80.9227467811159 227 30 97 0 6 232 28 254 Rhabditidoides sp. RS5443 small subunit ribosomal protein 14 (rps-14) mRNA, partial cds blastn 18855 254 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Diplogasteridae Rhabditidoides Rhabditidoides sp. RS5443
1439385 1439385 PRJNA1028258_P_NODE_33322_length_439_cov_1.754054_g32759_i0 PRJNA1028258 33322 439 1.754054 7.70029706 Strongyloides ratti 34506 Nematoda Nematoda 431 4.66e-116   NTclustered gi|1376144465|ref|XM_024652690.1| 34506 g32759 i0 87.433 84.9863325740319 374 47 85 0 1 374 374 1 Strongyloides ratti Actin, alpha cardiac muscle 1 (SRAE_2000170700), partial mRNA blastn 37309 431 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides ratti
1440352 1440352 PRJNA1028258_P_NODE_81582_length_285_cov_2.300926_g81019_i0 PRJNA1028258 81582 285 2.300926 6.5576391 Caenorhabditis remanei 31234 Nematoda Nematoda 209 1.48e-49   NTclustered gi|2445365262|ref|XM_003113149.2| 31234 g81019 i0 83.945 14.4701754385965 218 35 76 0 9 226 289 72 Caenorhabditis remanei uncharacterized protein (GCK72_009834), partial mRNA blastn 4124 209 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis remanei
2715660 2715660 PRJNA1028258_P_NODE_61163_length_326_cov_1.677043_g60600_i0 PRJNA1028258 61163 326 1.677043 5.46716018 Strongyloides papillosus 174720 Nematoda Nematoda 54.7 0.009   NTclustered gi|690018642|emb|LM525880.1| 174720 g60600 i0 100 0.0889570552147239 29 0 9 0 78 106 20107 20079 Strongyloides papillosus genome assembly S_papillosus_LIN ,scaffold SPAL_contig0000255 blastn 29 54.7 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides papillosus
2716323 2716323 PRJNA1028258_P_NODE_94763_length_266_cov_1.441624_g94200_i0 PRJNA1028258 94763 266 1.441624 3.83471984 Trichinella spiralis 6334 Nematoda Nematoda 185 2.3e-42   NTclustered gi|339238368|ref|XM_003380691.1| 6334 g94200 i0 79.623 10.2518796992481 265 49 98 4 6 266 560 297 Trichinella spiralis dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunitSTT3A (Tsp_06889) mRNA, partial cds blastn 2727 185 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Trichinellidae Trichinella Trichinella spiralis
4832718 4832718 PRJNA1028258_P_NODE_143104_length_233_cov_0.865854_g142541_i0 PRJNA1028258 143104 233 0.865854 2.01743982 Rhabditida 6236 Nematoda Nematoda 124 4.36e-24   NTclustered gi|256861442|gb|GQ422181.1| 54126 g142541 i0 80.24 8.75536480686695 167 31 71 2 42 207 528 363 Pristionchus pacificus large subunit ribosomal protein 9 (rpl-9) mRNA, partial cds blastn 2040 124 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Neodiplogasteridae Pristionchus Pristionchus pacificus
6541585 6541585 PRJNA1028258_P_NODE_12926_length_706_cov_1.989011_g12434_i0 PRJNA1028258 12926 706 1.989011 14.04241766 Diplogastrellus gracilis 669117 Nematoda Nematoda 405 4.6999999999999986e-108   NTclustered gi|256709130|gb|GQ422217.1| 669117 g12434 i0 77.401 51.7549575070822 708 142 99 16 8 706 16 714 Diplogastrellus gracilis large subunit ribosomal protein 2 (rpl-2) mRNA, partial cds blastn 36539 405 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Diplogasteridae Diplogastrellus Diplogastrellus gracilis
6541676 6541676 PRJNA1028258_P_NODE_134866_length_234_cov_4.733333_g134303_i0 PRJNA1028258 134866 234 4.733333 11.07599922 Strongyloides ratti 34506 Nematoda Nematoda 230 9.019999999999998e-56   NTclustered gi|1376149319|ref|XM_024642975.1| 34506 g134303 i0 86.893 87.0769230769231 206 25 88 2 1 205 232 28 Strongyloides ratti Actin, alpha cardiac muscle 1 (SRAE_2000414100), partial mRNA blastn 20376 230 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides ratti
6541726 6541726 PRJNA1028258_P_NODE_137986_length_234_cov_0.860606_g137423_i0 PRJNA1028258 137986 234 0.860606 2.01381804 Trichinella spiralis 6334 Nematoda Nematoda 56.5 0.002   NTclustered gi|339256971|ref|XM_003370091.1| 6334 g137423 i0 100 0.256410256410256 30 0 13 0 18 47 358 387 Trichinella spiralis putative rRNA-processing protein EBP2 (Tsp_14896) mRNA, partial cds blastn 60 56.5 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Trichinellidae Trichinella Trichinella spiralis
7817310 7817310 PRJNA1028258_P_NODE_36107_length_421_cov_5.008523_g35544_i0 PRJNA1028258 36107 421 5.008523 21.08588183 Pristionchus pauli 376545 Nematoda Nematoda 292 2.1899999999999993e-74   NTclustered gi|150982019|gb|EF634598.1| 376545 g35544 i0 81.492 5.35866983372922 362 61 85 6 53 411 37 395 Pristionchus pauli large subunit ribosomal protein 23 (rpl-23) mRNA, partial cds blastn 2256 292 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Neodiplogasteridae Pristionchus Pristionchus pauli
7818415 7818415 PRJNA1028258_P_NODE_90287_length_271_cov_1.633663_g89724_i0 PRJNA1028258 90287 271 1.633663 4.42722673 Rhabditidoides sp. RS5443 669111 Nematoda Nematoda 137 6.67e-28   NTclustered gi|256709203|gb|GQ422254.1| 669111 g89724 i0 81.609 15.1845018450185 174 25 62 7 87 255 9 180 Rhabditidoides sp. RS5443 small subunit ribosomal protein 28 (rps-28) mRNA, partial cds blastn 4115 137 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Diplogasteridae Rhabditidoides Rhabditidoides sp. RS5443
9091249 9091249 PRJNA1028258_P_NODE_141528_length_233_cov_0.865854_g140965_i0 PRJNA1028258 141528 233 0.865854 2.01743982 Caenorhabditis elegans 6239 Nematoda Nematoda 431 2.2899999999999996e-116   NTclustered gi|1972312565|ref|NM_001392916.1| 6239 g140965 i0 100 5 233 0 100 0 1 233 2022 2254 Caenorhabditis elegans Muscleblind-like protein (mbl-1), mRNA blastn 1165 431 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
10367782 10367782 PRJNA1028258_P_NODE_31749_length_450_cov_2.905512_g31187_i0 PRJNA1028258 31749 450 2.905512 13.074804 Pristionchus sp. 15 RS5229 452809 Nematoda Nematoda 193 2.46e-44   NTclustered gi|150984457|gb|EF634871.1| 452809 g31187 i0 77.848 20.6177777777778 316 66 70 3 107 420 329 16 Pristionchus sp. 15 RS5229 small subunit ribosomal protein 8 (rps-8) mRNA, partial cds blastn 9278 193 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Neodiplogasteridae Pristionchus Pristionchus sp. 15 RS5229
10368338 10368338 PRJNA1028258_P_NODE_57529_length_335_cov_3.981203_g56966_i0 PRJNA1028258 57529 335 3.981203 13.33703005 Pristionchus hoplostomus 1355913 Nematoda Nematoda 167 1.08e-36   NTclustered gi|524845312|gb|KC819366.1| 1355913 g56966 i0 81.166 39.8149253731343 223 28 64 11 64 279 264 49 Pristionchus hoplostomus strain JU1090 subunit ribosomal protein 20 (rps-20) mRNA, partial cds blastn 13338 167 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Neodiplogasteridae Pristionchus Pristionchus hoplostomus
10368340 10368340 PRJNA1028258_P_NODE_57649_length_335_cov_1.804511_g57086_i0 PRJNA1028258 57649 335 1.804511 6.04511185 Caenorhabditis elegans 6239 Nematoda Nematoda 294 4.750000000000001e-75   NTclustered gi|1972305872|ref|NM_076440.8| 6239 g57086 i0 85.172 87.8865671641791 290 39 86 4 28 315 1173 886 Caenorhabditis elegans Actin-4 (act-4), mRNA blastn 29442 294 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
14193394 14193394 PRJNA1028258_P_NODE_38432_length_408_cov_2.262537_g37869_i0 PRJNA1028258 38432 408 2.262537 9.23115096 Pelodera strongyloides 35557 Nematoda Nematoda 569 8.749999999999997e-158   NTclustered gi|158821913|gb|EU195977.1| 35557 g37869 i0 99.051 23.7769607843137 316 3 77 0 1 316 317 2 Pelodera strongyloides strain DF5022 28S ribosomal RNA gene, partial sequence blastn 9701 569 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Pelodera Pelodera strongyloides
15466678 15466678 PRJNA1028258_P_NODE_156993_length_229_cov_1.775000_g156430_i0 PRJNA1028258 156993 229 1.775 4.06475 Caenorhabditis briggsae 6238 Nematoda Nematoda 56.5 0.002   NTclustered gi|268532049|ref|XM_002631107.1| 6238 g156430 i0 100 0.131004366812227 30 0 13 0 45 74 972 943 Caenorhabditis briggsae Protein CBR-CUT-1 (Cbr-cut-1), partial mRNA blastn 30 56.5 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis briggsae
16740077 16740077 PRJNA1028258_P_NODE_113434_length_249_cov_2.950000_g112871_i0 PRJNA1028258 113434 249 2.95 7.3455 Strongyloides ratti 34506 Nematoda Nematoda 250 7.4499999999999995e-62   NTclustered gi|1376147859|ref|XM_024654603.1| 34506 g112871 i0 87.615 128.771084337349 218 23 87 4 1 216 231 446 Strongyloides ratti Polyubiquitin-C (SRAE_2000341300), partial mRNA blastn 32064 250 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides ratti
19288916 19288916 PRJNA1028258_P_NODE_116816_length_247_cov_1.191011_g116253_i0 PRJNA1028258 116816 247 1.191011 2.94179717 Caenorhabditis briggsae 6238 Nematoda Nematoda 163 9.88e-36   NTclustered gi|268553132|ref|XM_002634504.1| 6238 g116253 i0 85.714 44.1943319838057 154 22 62 0 92 245 83 236 Caenorhabditis briggsae Protein CBR-RPS-14 (Cbr-rps-14), partial mRNA blastn 10916 163 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis briggsae
19290833 19290833 PRJNA1028258_P_NODE_55296_length_342_cov_1.040293_g54733_i0 PRJNA1028258 55296 342 1.040293 3.55780206 Caenorhabditis briggsae 6238 Nematoda Nematoda 243 1.7900000000000001e-59   NTclustered gi|268537031|ref|XM_002633606.1| 6238 g54733 i0 82.206 62.1637426900585 281 50 82 0 62 342 58 338 Caenorhabditis briggsae Protein CBR-RPS-23 (Cbr-rps-23), partial mRNA blastn 21260 243 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis briggsae
21842166 21842166 PRJNA1028258_P_NODE_64138_length_319_cov_1.676000_g63575_i0 PRJNA1028258 64138 319 1.676 5.34644 Caenorhabditis remanei 31234 Nematoda Nematoda 224 5.989999999999998e-54   NTclustered gi|308452822|ref|XM_003089146.1| 31234 g63575 i0 82.609 15.4858934169279 253 44 79 0 25 277 361 109 Caenorhabditis remanei uncharacterized protein (GCK72_014297), partial mRNA blastn 4940 224 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis remanei
23117305 23117305 PRJNA1028258_P_NODE_52019_length_352_cov_1.505300_g51456_i0 PRJNA1028258 52019 352 1.5053 5.298656 Pristionchus maupasi 335527 Nematoda Nematoda 185 3.14e-42   NTclustered gi|150981849|gb|EF634494.1| 335527 g51456 i0 78.218 70.9715909090909 303 57 85 9 1 298 352 54 Pristionchus maupasi large subunit ribosomal protein 1 (rpl-1) mRNA, partial cds blastn 24982 185 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Neodiplogasteridae Pristionchus Pristionchus maupasi
24391026 24391026 PRJNA1028258_P_NODE_49400_length_361_cov_1.202055_g48837_i0 PRJNA1028258 49400 361 1.202055 4.33941855 Caenorhabditis elegans 6239 Nematoda Nematoda 52.8 0.034   NTclustered gi|1972264646|ref|NM_066119.9| 6239 g48837 i0 100 0.232686980609418 28 0 8 0 10 37 1425 1398 Caenorhabditis elegans Elongation factor 1-alpha (eef-1A.1), mRNA blastn 84 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;