RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA1028258" and tax_phylum = "Bdellovibrionota"

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tax_superkingdom 1

tax_phylum 1

  • Bdellovibrionota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1028258 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7815935 7815935 PRJNA1028258_P_NODE_125227_length_240_cov_1.350877_g124664_i0 PRJNA1028258 125227 240 1.350877 3.2421048 Micavibrio aeruginosavorus 349221 Bacteria Bacteria 416 6.649999999999998e-112   NTclustered gi|469926873|gb|CP003538.1| 349215 g124664 i0 97.917 1 240 5 100 0 1 240 1221824 1221585 Micavibrio aeruginosavorus EPB, complete genome blastn 240 416 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Micavibrio Micavibrio aeruginosavorus
18015507 18015507 PRJNA1028258_P_NODE_142135_length_233_cov_0.865854_g141572_i0 PRJNA1028258 142135 233 0.865854 2.01743982 Bdellovibrio sp. qaytius 1916293 Bacteria Bacteria 182 2.55e-41   NTclustered gi|1552089877|gb|CP025734.1| 1916293 g141572 i0 85.311 5.87124463519313 177 24 76 2 58 233 117338 117163 Bdellovibrio sp. qaytius chromosome, complete genome blastn 1368 182 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio sp. qaytius
18015673 18015673 PRJNA1028258_P_NODE_153355_length_230_cov_1.285714_g152792_i0 PRJNA1028258 153355 230 1.285714 2.9571422 Peredibacter starrii 28202 Bacteria Bacteria 268 1.87e-67   NTclustered gi|2631252187|gb|CP139487.1| 28202 g152792 i0 87.773 106.865217391304 229 28 99 0 1 229 116367 116595 Peredibacter starrii strain A3.12 chromosome, complete genome blastn 24579 268 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae Peredibacter Peredibacter starrii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;