RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "blastn", bioproject = "PRJNA1028258" and tax_clade = "Metamonada"

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tax_phylum 2

tax_superkingdom 1

tax_clade 1

  • Metamonada · 5 ✖

bioproject 1

  • PRJNA1028258 · 5 ✖

analysis 1

  • blastn · 5 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2715625 2715625 PRJNA1028258_P_NODE_59143_length_331_cov_1.782443_g58580_i0 PRJNA1028258 59143 331 1.782443 5.89988633 Tritrichomonas foetus 1144522 Parabasalia other_Eukaryota 52.8 0.031   NTclustered gi|2806457902|ref|XM_068492258.1| 1144522 g58580 i0 96.875 0.0966767371601208 32 0 10 1 184 215 1922 1892 Tritrichomonas foetus uncharacterized protein (TRFO_05045), partial mRNA blastn 32 52.8 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Tritrichomonadidae Tritrichomonas Tritrichomonas foetus
3990067 3990067 PRJNA1028258_P_NODE_131664_length_235_cov_1.271084_g131101_i0 PRJNA1028258 131664 235 1.271084 2.9870474 Trichomonas gallinae 56777 Parabasalia other_Eukaryota 156 1.56e-33   NTclustered gi|2587729139|gb|OR478975.1| 56777 g131101 i0 79.039 31.1957446808511 229 46 97 2 6 233 541 768 Trichomonas gallinae elongation factor 1 alpha (EF1A) mRNA, complete cds blastn 7331 156 1 Eukaryota Metamonada   Parabasalia   Trichomonadida Trichomonadidae Trichomonas Trichomonas gallinae
7815938 7815938 PRJNA1028258_P_NODE_125287_length_240_cov_1.292398_g124724_i0 PRJNA1028258 125287 240 1.292398 3.1017552 Monocercomonoides exilis 2049356 Preaxostyla other_Eukaryota 52.8 0.022   NTclustered gi|2794964238|ref|XM_067865056.1| 2049356 g124724 i0 100 0.116666666666667 28 0 12 0 10 37 1331 1358 Monocercomonoides exilis uncharacterized protein (MONOS_12437fu12438), mRNA blastn 28 52.8 1 Eukaryota Metamonada   Preaxostyla   Oxymonadida Polymastigidae Monocercomonoides Monocercomonoides exilis
7817342 7817342 PRJNA1028258_P_NODE_37607_length_413_cov_1.177326_g37044_i0 PRJNA1028258 37607 413 1.177326 4.86235638 Tritrichomonas foetus 1144522 Parabasalia other_Eukaryota 54.7 0.011   NTclustered gi|2806450614|ref|XM_068500446.1| 1144522 g37044 i0 100 0.0702179176755448 29 0 7 0 209 237 4312 4340 Tritrichomonas foetus uncharacterized protein (TRFO_18903), partial mRNA blastn 29 54.7 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Tritrichomonadidae Tritrichomonas Tritrichomonas foetus
11643237 11643237 PRJNA1028258_P_NODE_34610_length_431_cov_0.994475_g34047_i0 PRJNA1028258 34610 431 0.994475 4.28618725 Trimastix marina 137419 Preaxostyla other_Eukaryota 470 9.69e-128   NTclustered gi|84105378|gb|DQ295217.1| 137419 g34047 i0 87.05 92.046403712297 417 52 97 2 16 431 5 420 Trimastix marina alpha tubulin 1 gene, partial cds blastn 39672 470 1 Eukaryota Metamonada   Preaxostyla     Trimastigidae Trimastix Trimastix marina

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;