RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA1025141" and tax_phylum = "Rotifera"

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tax_superkingdom 1

tax_phylum 1

  • Rotifera · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1025141 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1004176 1004176 PRJNA1025141_P_NODE_5381_length_347_cov_1.543796_g5320_i0 PRJNA1025141 5381 347 1.543796 5.35697212 Macrotrachela 104787 Rotifera other_Eukaryota 560 4.42e-155   NTclustered gi|296011549|gb|HM032953.1| 764063 g5320 i0 95.942 99.2564841498559 345 14 99 0 3 347 406 62 Macrotrachela sp. Mac3 isolate MyBa1.6 cytochrome oxidase subunit 1 (cox1) gene, partial cds; mitochondrial blastn 34442 560 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Philodinida Philodinidae Macrotrachela Macrotrachela sp. Mac3
3989321 3989321 PRJNA1025141_P_NODE_1424_length_695_cov_1.609325_g1367_i0 PRJNA1025141 1424 695 1.609325 11.18480875 Macrotrachela quadricornifera 104788 Rotifera other_Eukaryota 863 0   NTclustered gi|402761743|gb|JX184003.1| 104788 g1367 i0 89.065 95.7467625899281 695 76 100 0 1 695 643 1337 Macrotrachela quadricornifera isolate MQ cytochrome c oxidase subunit 1 (COX1) gene, partial cds; mitochondrial blastn 66544 863 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Philodinida Philodinidae Macrotrachela Macrotrachela quadricornifera
10365963 10365963 PRJNA1025141_P_NODE_1269_length_733_cov_6.471212_g1214_i0 PRJNA1025141 1269 733 6.471212 47.43398396 Philodina citrina 468664 Rotifera other_Eukaryota 881 0   NTclustered gi|407227484|emb|FR856884.1| 468664 g1214 i0 88.482 23.1664392905866 738 74 100 10 1 733 1659 2390 Philodina citrina complete mitochondrial genome blastn 16981 881 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Philodinida Philodinidae Philodina Philodina citrina

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;