RNAquarium Metadata Server
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contig_metadata

8 rows where analysis = "blastn", bioproject = "PRJNA1025141" and tax_phylum = "Oomycota"

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tax_superkingdom 1

tax_phylum 1

  • Oomycota · 8 ✖

tax_clade 1

bioproject 1

  • PRJNA1025141 · 8 ✖

analysis 1

  • blastn · 8 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
162843 162843 PRJNA1025141_P_NODE_8261_length_273_cov_0.960000_g8200_i0 PRJNA1025141 8261 273 0.96 2.6208 Phytophthora cinnamomi 4785 SAR_Eukaryotes SAR_Eukaryotes 248 2.98e-61   NTclustered gi|2795026849|ref|XM_067926286.1| 4785 g8200 i0 86.937 75.974358974359 222 27 81 2 12 232 495 275 Phytophthora cinnamomi succinyl-CoA ligase [GDP-forming] subunit alpha, mitochondrial (IUM83_02375), partial mRNA blastn 20741 248 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora cinnamomi
2713244 2713244 PRJNA1025141_P_NODE_5983_length_327_cov_2.866142_g5922_i0 PRJNA1025141 5983 327 2.866142 9.37228434 Phytophthora sojae 67593 SAR_Eukaryotes SAR_Eukaryotes 182 3.76e-41   NTclustered gi|695460853|ref|XM_009539792.1| 67593 g5922 i0 87.342 13.131498470948 158 20 48 0 8 165 151 308 Phytophthora sojae hypothetical protein mRNA blastn 4294 182 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora sojae
2713269 2713269 PRJNA1025141_P_NODE_7643_length_285_cov_1.816038_g7582_i0 PRJNA1025141 7643 285 1.816038 5.1757083 Phytophthora infestans 4787 SAR_Eukaryotes SAR_Eukaryotes 195 4.13e-45   NTclustered gi|301099992|ref|XM_002899041.1| 403677 g7582 i0 79.779 3.97543859649123 272 51 95 4 1 270 165 434 Phytophthora infestans T30-4 40S ribosomal protein S16 (PITG_14913), partial mRNA blastn 1133 195 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora infestans
3989368 3989368 PRJNA1025141_P_NODE_4104_length_401_cov_1.268293_g4043_i0 PRJNA1025141 4104 401 1.268293 5.08585493 Phytophthora ramorum 164328 SAR_Eukaryotes SAR_Eukaryotes 193 2.17e-44   NTclustered gi|2794929698|ref|XM_067885402.1| 164328 g4043 i0 77.193 56.0074812967581 342 71 84 6 59 395 29 368 Phytophthora ramorum 60S ribosomal protein L18a (KRP23_14565), partial mRNA blastn 22459 193 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora ramorum
7815337 7815337 PRJNA1025141_P_NODE_2307_length_538_cov_1.002151_g2246_i0 PRJNA1025141 2307 538 1.002151 5.39157238 Phytophthora ramorum 164328 SAR_Eukaryotes SAR_Eukaryotes 322 3.65e-83   NTclustered gi|2794920874|ref|XM_067880626.1| 164328 g2246 i0 79.339 87.3029739776952 484 80 88 16 9 482 1067 594 Phytophthora ramorum Adenosylhomocysteinase (KRP23_10205), partial mRNA blastn 46969 322 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora ramorum
15031859 15031859 PRJNA1025141_P_NODE_2632_length_505_cov_2.673611_g2571_i0 PRJNA1025141 2632 505 2.673611 13.50173555 Saprolegnia 4769 SAR_Eukaryotes SAR_Eukaryotes 300 1.6e-76   NTclustered gi|813142340|ref|XM_012343869.1| 695850 g2571 i0 78.054 89.9069306930693 483 100 95 6 10 489 63 542 Saprolegnia parasitica CBS 223.65 40S ribosomal protein S6 mRNA blastn 45403 300 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Saprolegniaceae Saprolegnia Saprolegnia parasitica
16739687 16739687 PRJNA1025141_P_NODE_12914_length_241_cov_1.136905_g12853_i0 PRJNA1025141 12914 241 1.136905 2.73994105 Phytophthora cinnamomi 4785 SAR_Eukaryotes SAR_Eukaryotes 246 9.27e-61   NTclustered gi|2795049776|ref|XM_067938656.1| 4785 g12853 i0 86.026 54 229 32 95 0 1 229 327 555 Phytophthora cinnamomi polyadenylate-binding protein 1-B (IUM83_13951), partial mRNA blastn 13014 246 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora cinnamomi
18014665 18014665 PRJNA1025141_P_NODE_3855_length_414_cov_2.583578_g3794_i0 PRJNA1025141 3855 414 2.583578 10.69601292 Phytophthora infestans 4787 SAR_Eukaryotes SAR_Eukaryotes 178 6.2899999999999986e-40   NTclustered gi|301093299|ref|XM_002997452.1| 403677 g3794 i0 82.075 41.0289855072464 212 34 51 4 65 274 378 169 Phytophthora infestans T30-4 nascent polypeptide-associated complex subunit alpha-like protein, putative (PITG_19008), partial mRNA blastn 16986 178 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora infestans

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;