RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA1025141" and tax_phylum = "Nematoda"

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tax_superkingdom 1

tax_phylum 1

  • Nematoda · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1025141 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6540954 6540954 PRJNA1025141_P_NODE_3026_length_470_cov_2.977330_g2965_i0 PRJNA1025141 3026 470 2.97733 13.993451 Pristionchus pauli 376545 Nematoda Nematoda 292 2.4699999999999993e-74   NTclustered gi|150982019|gb|EF634598.1| 376545 g2965 i0 81.492 4.8 362 61 76 6 50 408 395 37 Pristionchus pauli large subunit ribosomal protein 23 (rpl-23) mRNA, partial cds blastn 2256 292 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Neodiplogasteridae Pristionchus Pristionchus pauli
17581951 17581951 PRJNA1025141_P_NODE_3514_length_435_cov_2.696133_g3453_i0 PRJNA1025141 3514 435 2.696133 11.72817855 Rhabditida 6236 Nematoda Nematoda 219 3.91e-52   NTclustered gi|268571788|ref|XM_002641103.1| 6238 g3453 i0 78.655 33.2114942528736 342 63 77 6 85 421 55 391 Caenorhabditis briggsae Protein CBR-RPL-23 (Cbr-rpl-23), partial mRNA blastn 14447 220 0.995454545454545 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis briggsae
17581964 17581964 PRJNA1025141_P_NODE_6374_length_317_cov_1.118852_g6313_i0 PRJNA1025141 6374 317 1.118852 3.54676084 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 226 1.65e-54   NTclustered gi|1376148845|ref|XM_024642710.1| 34506 g6313 i0 80.471 78.416403785489 297 56 93 2 17 312 715 1010 Strongyloides ratti Tubulin beta-2A chain (SRAE_2000390300), partial mRNA blastn 24858 226 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides ratti

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;