RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA1025141" and tax_phylum = "Myxococcota"

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tax_superkingdom 1

tax_phylum 1

  • Myxococcota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1025141 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
162699 162699 PRJNA1025141_P_NODE_11481_length_245_cov_1.145349_g11420_i0 PRJNA1025141 11481 245 1.145349 2.80610505 Minicystis rosea 888845 Bacteria Bacteria 285 2.0000000000000002e-72   NTclustered gi|1127353251|gb|CP016211.1| 888845 g11420 i0 87.755 307.959183673469 245 29 99 1 1 244 768849 769093 Minicystis rosea strain DSM 24000 chromosome, complete genome blastn 75450 285 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae Minicystis Minicystis rosea
3554703 3554703 PRJNA1025141_P_NODE_2763_length_493_cov_0.816667_g2702_i0 PRJNA1025141 2763 493 0.816667 4.02616831 Archangium 47 Bacteria Bacteria 54.7 0.013   NTclustered gi|827418478|gb|CP011509.1| 48 g2702 i0 100 0.117647058823529 29 0 6 0 14 42 730539 730567 Archangium gephyra strain DSM 2261, complete genome blastn 58 54.7 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Archangiaceae Archangium Archangium gephyra
11641372 11641372 PRJNA1025141_P_NODE_2470_length_520_cov_2.563758_g2409_i0 PRJNA1025141 2470 520 2.563758 13.3315416 Archangium violaceum 83451 Bacteria Bacteria 56.5 0.004   NTclustered gi|2619762464|gb|CP137851.1| 83451 g2409 i0 100 0.0576923076923077 30 0 6 0 231 260 3221785 3221756 Archangium violaceum strain KYC5002 chromosome, complete genome blastn 30 56.5 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Archangiaceae Archangium Archangium violaceum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;