RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJNA1025141" and tax_phylum = "Evosea"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Evosea · 6 ✖

tax_clade 1

bioproject 1

  • PRJNA1025141 · 6 ✖

analysis 1

  • blastn · 6 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
162842 162842 PRJNA1025141_P_NODE_8241_length_273_cov_1.155000_g8180_i0 PRJNA1025141 8241 273 1.155 3.15315 Acytostelium subglobosum 361139 Evosea other_Eukaryota 139 1.87e-28   NTclustered gi|831768889|ref|XM_012897087.1| 1410327 g8180 i0 77.459 49.1538461538462 244 47 88 6 15 254 764 525 Acytostelium subglobosum LB1 hypothetical protein partial mRNA blastn 13419 139 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Acytosteliaceae Acytostelium Acytostelium subglobosum
2279349 2279349 PRJNA1025141_P_NODE_11802_length_244_cov_2.257310_g11741_i0 PRJNA1025141 11802 244 2.25731 5.5078364 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 204 5.74e-48   NTclustered gi|2329703080|gb|MW239897.1| 523813 g11741 i0 83.26 92.6844262295082 227 32 92 6 3 226 337 560 Diderma floriforme strain MA-Fungi 81015 alpha tubulin (aTUB) gene, partial cds blastn 22615 204 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Physariida Didymiaceae Diderma Diderma floriforme
9932238 9932238 PRJNA1025141_P_NODE_9248_length_252_cov_1.932961_g9187_i0 PRJNA1025141 9248 252 1.932961 4.87106172 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 246 9.77e-61   NTclustered gi|66820523|ref|XM_638773.1| 352472 g9187 i0 87.678 51.8293650793651 211 26 84 0 1 211 220 10 Dictyostelium discoideum AX4 hypothetical protein (act22) mRNA, complete cds blastn 13061 246 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium discoideum
10365945 10365945 PRJNA1025141_P_NODE_11369_length_246_cov_0.890173_g11308_i0 PRJNA1025141 11369 246 0.890173 2.18982558 Dictyostelium purpureum 5786 Evosea other_Eukaryota 233 7.39e-57   NTclustered gi|330805886|ref|XM_003290860.1| 5786 g11308 i0 83.806 162.134146341463 247 38 100 2 1 246 469 224 Dictyostelium purpureum ubiquitin (DICPUDRAFT_57034), mRNA blastn 39885 233 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium purpureum
16739753 16739753 PRJNA1025141_P_NODE_4534_length_382_cov_0.864078_g4473_i0 PRJNA1025141 4534 382 0.864078 3.30077796 Acytostelium subglobosum 361139 Evosea other_Eukaryota 165 4.48e-36   NTclustered gi|831788452|ref|XM_012903297.1| 1410327 g4473 i0 75.74 11.196335078534 338 76 88 5 48 382 1907 1573 Acytostelium subglobosum LB1 hypothetical protein partial mRNA blastn 4277 165 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Acytosteliaceae Acytostelium Acytostelium subglobosum
23115055 23115055 PRJNA1025141_P_NODE_3959_length_409_cov_0.907738_g3898_i0 PRJNA1025141 3959 409 0.907738 3.71264842 Dictyostelium discoideum 44689 Evosea other_Eukaryota 518 3.22e-142   NTclustered gi|66821326|ref|XM_639065.1| 352472 g3898 i0 89.487 97.8630806845966 409 43 100 0 1 409 1072 664 Dictyostelium discoideum AX4 hypothetical protein (act13) mRNA, complete cds blastn 40026 518 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium discoideum

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;