RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA1025141" and tax_phylum = "Euglenozoa"

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tax_superkingdom 1

tax_phylum 1

  • Euglenozoa · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA1025141 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9090464 9090464 PRJNA1025141_P_NODE_9308_length_251_cov_1.623596_g9247_i0 PRJNA1025141 9308 251 1.623596 4.07522596 Rhynchobodo ATCC50359 51334 Euglenozoa other_Eukaryota 180 1e-40   NTclustered gi|55824397|gb|AY651252.1| 51334 g9247 i0 81.364 47.2549800796813 220 41 88 0 23 242 1 220 Rhynchobodo ATCC50359 heat shock protein 90 gene, partial cds blastn 11861 180 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Neobodonida   Rhynchobodo Rhynchobodo ATCC50359
16739661 16739661 PRJNA1025141_P_NODE_11294_length_246_cov_0.890173_g11233_i0 PRJNA1025141 11294 246 0.890173 2.18982558 Leptomonas pyrrhocoris 157538 Euglenozoa other_Eukaryota 322 1.53e-83   NTclustered gi|1002447406|ref|XM_015802755.1| 157538 g11233 i0 90.244 59.890243902439 246 24 100 0 1 246 1484 1729 Leptomonas pyrrhocoris putative mitochondrial elongation factor 2 (EF2-1) mRNA blastn 14733 322 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Leptomonas Leptomonas pyrrhocoris
22680904 22680904 PRJNA1025141_P_NODE_7438_length_290_cov_1.156682_g7377_i0 PRJNA1025141 7438 290 1.156682 3.3543778 Euglenida 3035 Euglenozoa other_Eukaryota 215 3.24e-51   NTclustered gi|5733381|gb|AF095840.1|AF095840 101493 g7377 i0 82.061 81.5586206896552 262 37 89 9 34 290 1229 973 Entosiphon sulcatum b-tubulin (tub-b) gene, complete cds blastn 23652 217 0.990783410138249 Eukaryota Discoba   Euglenozoa Euglenida Heteronematales Peranemataceae Entosiphon Entosiphon sulcatum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;