RNAquarium Metadata Server
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contig_metadata

7 rows where analysis = "blastn", bioproject = "PRJNA1025141" and tax_phylum = "Bacillota"

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tax_superkingdom 1

tax_phylum 1

  • Bacillota · 7 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1025141 · 7 ✖

analysis 1

  • blastn · 7 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3989323 3989323 PRJNA1025141_P_NODE_1564_length_663_cov_1.161017_g1505_i0 PRJNA1025141 1564 663 1.161017 7.69754271 Oscillospiraceae bacterium 2485925 Bacteria Bacteria 309 3.5500000000000006e-79   NTclustered gi|2188892147|dbj|AP025582.1| 2485925 g1505 i0 76.965 62.1990950226244 547 122 82 4 56 600 912748 913292 Oscillospiraceae bacterium CE91-St43 DNA, complete genome blastn 41238 309 1 Bacteria   Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae   Oscillospiraceae bacterium
3989366 3989366 PRJNA1025141_P_NODE_4024_length_405_cov_1.623494_g3963_i0 PRJNA1025141 4024 405 1.623494 6.5751507 Bacillus sp. N1-1 2682541 Bacteria Bacteria 52.8 0.039   NTclustered gi|1788749933|gb|CP046564.1| 2682541 g3963 i0 100 0.0691358024691358 28 0 7 0 18 45 1237930 1237903 Bacillus sp. N1-1 chromosome, complete genome blastn 28 52.8 1 Bacteria   Bacillati Bacillota Bacilli Bacillales Bacillaceae Bacillus Bacillus sp. N1-1
3989403 3989403 PRJNA1025141_P_NODE_6684_length_309_cov_0.978814_g6623_i0 PRJNA1025141 6684 309 0.978814 3.02453526 Streptococcus infantis 68892 Bacteria Bacteria 52.8 0.029   NTclustered gi|2179903814|gb|CP046525.1| 68892 g6623 i0 100 0.0906148867313916 28 0 9 0 54 81 1119472 1119445 Streptococcus infantis strain SO chromosome, complete genome blastn 28 52.8 1 Bacteria   Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus infantis
9932222 9932222 PRJNA1025141_P_NODE_548_length_1067_cov_21.975855_g7_i3 PRJNA1025141 548 1067 21.975855 234.48237285 root 1 Root_unresolved Root_unresolved 1738 0   NTclustered gi|2283119276|gb|CP071933.1| 1390 g7 i3 96.071 137.711340206186 1069 38 100 3 1 1067 1381 315 Bacillus amyloliquefaciens strain CAS02 plasmid unnamed, complete sequence blastn 146938 1744 0.996559633027523 Bacteria   Bacillati Bacillota Bacilli Bacillales Bacillaceae Bacillus Bacillus amyloliquefaciens
11207443 11207443 PRJNA1025141_P_NODE_2549_length_513_cov_1.890909_g2488_i0 PRJNA1025141 2549 513 1.890909 9.70036317 Exiguobacterium 33986 Bacteria Bacteria 948 0   NTclustered gi|2851235694|gb|CP085238.1| 33987 g2488 i0 100 726.974658869396 513 0 100 0 1 513 12605 13117 Exiguobacterium aurantiacum strain ADH2-127 chromosome, complete genome blastn 372938 948 1 Bacteria   Bacillati Bacillota Bacilli Bacillales   Exiguobacterium Exiguobacterium aurantiacum
20564043 20564043 PRJNA1025141_P_NODE_9197_length_253_cov_1.738889_g9136_i0 PRJNA1025141 9197 253 1.738889 4.39938917 Lactobacillus iners 147802 Bacteria Bacteria 468 1.92e-127   NTclustered gi|2769739957|gb|CP160078.1| 147802 g9136 i0 100 486.624505928854 253 0 100 0 1 253 3139 3391 Lactobacillus iners strain 0998_735_1_CBA_90B_S800 chromosome, complete genome blastn 123116 468 1 Bacteria   Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus Lactobacillus iners
20564056 20564056 PRJNA1025141_P_NODE_9637_length_251_cov_0.865169_g9576_i0 PRJNA1025141 9637 251 0.865169 2.17157419 Paenibacillus psychroresistens 1778678 Bacteria Bacteria 56.5 0.002   NTclustered gi|1780029168|gb|CP034235.1| 1778678 g9576 i0 97.059 0.274900398406374 34 0 14 1 122 155 4143053 4143085 Paenibacillus psychroresistens strain ML311-T8 chromosome, complete genome blastn 69 56.5 1 Bacteria   Bacillati Bacillota Bacilli Bacillales Paenibacillaceae Paenibacillus Paenibacillus psychroresistens

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;