RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA1025141" and tax_phylum = "Bacillariophyta"

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tax_superkingdom 1

tax_phylum 1

  • Bacillariophyta · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA1025141 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
11641455 11641455 PRJNA1025141_P_NODE_7410_length_291_cov_1.059633_g7349_i0 PRJNA1025141 7410 291 1.059633 3.08353203 Achnanthes kuwaitensis 483531 SAR_Eukaryotes SAR_Eukaryotes 178 4.26e-40   NTclustered gi|225685850|dbj|AB461923.1| 483531 g7349 i0 77.816 78.3161512027491 293 61 100 4 1 291 643 353 Achnanthes kuwaitensis MAT mRNA for methionine S-adenosyl transferase, complete cds blastn 22790 178 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Mastogloiales Achnanthaceae Achnanthes Achnanthes kuwaitensis
14191408 14191408 PRJNA1025141_P_NODE_4132_length_400_cov_0.917431_g4071_i0 PRJNA1025141 4132 400 0.917431 3.669724 Phaeodactylum tricornutum 2850 SAR_Eukaryotes SAR_Eukaryotes 494 5.299999999999999e-135   NTclustered gi|657012367|gb|KF302531.1| 2850 g4071 i0 93.175 91.0675 337 21 84 2 65 400 15 350 Phaeodactylum tricornutum clone C443 40S ribosomal protein mRNA, partial cds blastn 36427 494 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Naviculales Phaeodactylaceae Phaeodactylum Phaeodactylum tricornutum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;