RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA1025141" and tax_clade = "Apusozoa"

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tax_superkingdom 1

tax_clade 1

  • Apusozoa · 4 ✖

bioproject 1

  • PRJNA1025141 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6540982 6540982 PRJNA1025141_P_NODE_506_length_1103_cov_5.203883_g474_i0 PRJNA1025141 506 1103 5.203883 57.39882949 Thecamonas trahens 529818 Root_unresolved Root_unresolved 403 2.6899999999999992e-107   NTclustered gi|923134252|ref|XM_013905138.1| 461836 g474 i0 76.428 15.8585675430644 823 148 73 33 110 909 198 997 Thecamonas trahens ATCC 50062 adenine nucleotide translocator (AMSG_02751), mRNA blastn 17492 403 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens
10365975 10365975 PRJNA1025141_P_NODE_1449_length_689_cov_1.423701_g1391_i0 PRJNA1025141 1449 689 1.423701 9.80929989 Thecamonas trahens 529818 Root_unresolved Root_unresolved 337 1.7e-87   NTclustered gi|923133140|ref|XM_013904582.1| 461836 g1391 i0 78.99 41.2119013062409 495 102 72 2 129 622 494 1 Thecamonas trahens ATCC 50062 Ras-like protein rasG (AMSG_03185), partial mRNA blastn 28395 337 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens
12916455 12916455 PRJNA1025141_P_NODE_11511_length_245_cov_0.895349_g11450_i0 PRJNA1025141 11511 245 0.895349 2.19360505 Thecamonas trahens 529818 Root_unresolved Root_unresolved 56.5 0.002   NTclustered gi|923132710|ref|XM_013904367.1| 461836 g11450 i0 96.97 0.13469387755102 33 1 13 0 16 48 2245 2277 Thecamonas trahens ATCC 50062 disintegrin (AMSG_03465), mRNA blastn 33 56.5 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens
16739726 16739726 PRJNA1025141_P_NODE_3014_length_471_cov_3.035176_g2953_i0 PRJNA1025141 3014 471 3.035176 14.29567896 Thecamonas trahens 529818 Root_unresolved Root_unresolved 224 9.169999999999999e-54   NTclustered gi|923125359|ref|XM_013900694.1| 461836 g2953 i0 82.879 41.2993630573248 257 36 54 6 30 282 529 277 Thecamonas trahens ATCC 50062 calmodulin (AMSG_07687), mRNA blastn 19452 224 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;