RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA1022587" and tax_phylum = "Actinomycetota"

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tax_superkingdom 1

tax_phylum 1

  • Actinomycetota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1022587 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9932187 9932187 PRJNA1022587_S_NODE_48_length_775_cov_2.384615_g46_i0 PRJNA1022587 48 775 2.384615 18.48076625 Bifidobacterium 1678 Bacteria Bacteria 1426 0   NTclustered gi|2264088050|gb|CP071805.1| 1694 g46 i0 99.871 388.327741935484 775 1 100 0 1 775 695716 694942 Bifidobacterium pseudolongum strain NjM1 chromosome, complete genome blastn 300954 1426 1 Bacteria   Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bifidobacterium pseudolongum
10365913 10365913 PRJNA1022587_S_NODE_989_length_274_cov_1.890547_g987_i0 PRJNA1022587 989 274 1.890547 5.18009878 Bifidobacterium pseudolongum 1694 Bacteria Bacteria 507 4.47e-139   NTclustered gi|2264088050|gb|CP071805.1| 1694 g987 i0 100 340.197080291971 274 0 100 0 1 274 696565 696292 Bifidobacterium pseudolongum strain NjM1 chromosome, complete genome blastn 93214 507 1 Bacteria   Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bifidobacterium pseudolongum
18855762 18855762 PRJNA1022587_S_NODE_815_length_293_cov_2.527273_g813_i0 PRJNA1022587 815 293 2.527273 7.40490989 Bifidobacterium 1678 Bacteria Bacteria 542 1.32e-149   NTclustered gi|2430732346|gb|CP116220.1| 31954 g813 i0 100 322.119453924915 293 0 100 0 1 293 156218 155926 Bifidobacterium pseudolongum subsp. pseudolongum strain NCIMB 702244 chromosome blastn 94381 542 1 Bacteria   Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bifidobacterium pseudolongum
24388777 24388777 PRJNA1022587_S_NODE_460_length_351_cov_2.374101_g458_i0 PRJNA1022587 460 351 2.374101 8.33309451 Bifidobacterium pseudolongum 1694 Bacteria Bacteria 627 4.329999999999999e-175   NTclustered gi|1238813787|gb|CP022544.1| 1694 g458 i0 98.86 215.843304843305 351 4 100 0 1 351 1491890 1492240 Bifidobacterium pseudolongum strain UMB-MBP-01, complete genome blastn 75761 627 1 Bacteria   Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bifidobacterium pseudolongum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;