RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA1022392" and tax_phylum = "Thermodesulfobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Thermodesulfobacteriota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1022392 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2712724 2712724 PRJNA1022392_P_NODE_52163_length_187_cov_2.892857_g51494_i0 PRJNA1022392 52163 187 2.892857 5.40964259 uncultured Mailhella sp. 1981031 Bacteria Bacteria 274 3.14e-69   NTclustered gi|2729058701|emb|OZ007001.1| 1981031 g51494 i0 93.048 8.9144385026738 187 13 100 0 1 187 227991 227805 MAG: uncultured Mailhella sp. isolate metabat2_pooled_hifiasm.920 MAG genome assembly, chromosome: 1 blastn 1667 274 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfovibrionaceae Mailhella uncultured Mailhella sp.
9089953 9089953 PRJNA1022392_P_NODE_60228_length_177_cov_1.415385_g59559_i0 PRJNA1022392 60228 177 1.415385 2.50523145 Desulfovibrio desulfuricans 876 Bacteria Bacteria 270 3.7899999999999986e-68   NTclustered gi|2172810686|gb|CP077745.1| 876 g59559 i0 94.318 2.98305084745763 176 10 99 0 1 176 2302117 2302292 Desulfovibrio desulfuricans strain Edelweiss chromosome, complete genome blastn 528 270 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfovibrionaceae Desulfovibrio Desulfovibrio desulfuricans
15464723 15464723 PRJNA1022392_P_NODE_28993_length_206_cov_4.094340_g28324_i0 PRJNA1022392 28993 206 4.09434 8.4343404 Desulfovibrio desulfuricans 876 Bacteria Bacteria 281 2.11e-71   NTclustered gi|2172810686|gb|CP077745.1| 876 g28324 i0 89.352 3.15533980582524 216 13 100 1 1 206 2644035 2644250 Desulfovibrio desulfuricans strain Edelweiss chromosome, complete genome blastn 650 281 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfovibrionaceae Desulfovibrio Desulfovibrio desulfuricans
20563505 20563505 PRJNA1022392_P_NODE_56177_length_182_cov_2.192593_g55508_i0 PRJNA1022392 56177 182 2.192593 3.99051926 Thermodesulfobacterium commune 1741 Bacteria Bacteria 337 3.82e-88   NTclustered gi|668351138|gb|CP008796.1| 289377 g55508 i0 100 1 182 0 100 0 1 182 1391597 1391778 Thermodesulfobacterium commune DSM 2178, complete genome blastn 182 337 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Thermodesulfobacteria Thermodesulfobacteriales Thermodesulfobacteriaceae Thermodesulfobacterium Thermodesulfobacterium commune

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;