RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "blastn", bioproject = "PRJNA1022392" and tax_phylum = "Nitrospirota"

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tax_superkingdom 1

tax_phylum 1

  • Nitrospirota · 5 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1022392 · 5 ✖

analysis 1

  • blastn · 5 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
162452 162452 PRJNA1022392_P_NODE_68161_length_167_cov_1.625000_g67492_i0 PRJNA1022392 68161 167 1.625 2.71375 Nitrospira sp. 70125 Bacteria Bacteria 193 7.909999999999999e-45   NTclustered gi|2194432121|gb|CP092081.1| 70125 g67492 i0 87.425 2 167 21 100 0 1 167 2471874 2471708 MAG: Nitrospira sp. isolate UBC2 chromosome blastn 334 193 1 Bacteria   Pseudomonadati Nitrospirota Nitrospiria Nitrospirales Nitrospiraceae Nitrospira Nitrospira sp.
5265413 5265413 PRJNA1022392_P_NODE_77285_length_159_cov_2.258929_g76616_i0 PRJNA1022392 77285 159 2.258929 3.59169711 Nitrospira sp. 70125 Bacteria Bacteria 185 1.2399999999999997e-42   NTclustered gi|2194432121|gb|CP092081.1| 70125 g76616 i0 87.898 0.987421383647799 157 19 99 0 1 157 3362224 3362380 MAG: Nitrospira sp. isolate UBC2 chromosome blastn 157 185 1 Bacteria   Pseudomonadati Nitrospirota Nitrospiria Nitrospirales Nitrospiraceae Nitrospira Nitrospira sp.
16739548 16739548 PRJNA1022392_P_NODE_80234_length_157_cov_1.827273_g79565_i0 PRJNA1022392 80234 157 1.827273 2.86881861 Nitrospira japonica 1325564 Bacteria Bacteria 134 4.5e-27   NTclustered gi|1167499077|emb|LT828648.1| 1325564 g79565 i0 83.333 0.917197452229299 144 24 92 0 7 150 1625755 1625898 Nitrospira japonica isolate Genome sequencing of Nitrospira japonica strain NJ11 genome assembly, chromosome: I blastn 144 134 1 Bacteria   Pseudomonadati Nitrospirota Nitrospiria Nitrospirales Nitrospiraceae Nitrospira Nitrospira japonica
21839203 21839203 PRJNA1022392_P_NODE_57018_length_181_cov_1.955224_g56349_i0 PRJNA1022392 57018 181 1.955224 3.53895544 Nitrospira japonica 1325564 Bacteria Bacteria 156 1.14e-33   NTclustered gi|1167499077|emb|LT828648.1| 1325564 g56349 i0 83.041 1.79558011049724 171 29 94 0 10 180 1762503 1762333 Nitrospira japonica isolate Genome sequencing of Nitrospira japonica strain NJ11 genome assembly, chromosome: I blastn 325 156 1 Bacteria   Pseudomonadati Nitrospirota Nitrospiria Nitrospirales Nitrospiraceae Nitrospira Nitrospira japonica
24388402 24388402 PRJNA1022392_P_NODE_53840_length_185_cov_2.079710_g53171_i0 PRJNA1022392 53840 185 2.07971 3.8474635 Candidatus Nitrospira inopinata 1715989 Bacteria Bacteria 159 9.049999999999999e-35   NTclustered gi|952974062|emb|LN885086.1| 1715989 g53171 i0 83.832 0.902702702702703 167 27 90 0 17 183 2005455 2005289 Nitrospira sp. ENR4 genome assembly NiCh1, chromosome : 1 blastn 167 159 1 Bacteria   Pseudomonadati Nitrospirota Nitrospiria Nitrospirales Nitrospiraceae Nitrospira Candidatus Nitrospira inopinata

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;