RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "blastn", bioproject = "PRJNA1022392" and tax_phylum = "Mollusca"

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tax_superkingdom 1

tax_phylum 1

  • Mollusca · 5 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1022392 · 5 ✖

analysis 1

  • blastn · 5 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6540160 6540160 PRJNA1022392_P_NODE_28886_length_206_cov_4.144654_g28217_i0 PRJNA1022392 28886 206 4.144654 8.53798724 Bradybaena similaris 145626 Mollusca Mollusca 56.5 0.001   NTclustered gi|2912983111|dbj|AP039588.1| 145626 g28217 i0 100 0.427184466019417 30 0 15 0 68 97 41445040 41445011 Bradybaena similaris mixture of YIPCMo001421 and YIPCMo001540 DNA, chromosome 7, sequence blastn 88 56.5 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda Stylommatophora Camaenidae Bradybaena Bradybaena similaris
7814481 7814481 PRJNA1022392_P_NODE_19867_length_240_cov_1.953368_g19198_i0 PRJNA1022392 19867 240 1.953368 4.6880832 Bradybaena similaris 145626 Mollusca Mollusca 52.8 0.022   NTclustered gi|2912997258|dbj|AP039602.1| 145626 g19198 i0 100 0.116666666666667 28 0 12 0 108 135 34723434 34723407 Bradybaena similaris mixture of YIPCMo001421 and YIPCMo001540 DNA, chromosome 21, sequence blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda Stylommatophora Camaenidae Bradybaena Bradybaena similaris
12916081 12916081 PRJNA1022392_P_NODE_60451_length_176_cov_6.449612_g59782_i0 PRJNA1022392 60451 176 6.449612 11.35131712 Mya arenaria 6604 Mollusca Mollusca 52.8 0.015   NTclustered gi|2427347820|ref|XM_052943611.1| 6604 g59782 i0 100 0.159090909090909 28 0 16 0 148 175 4314 4287 PREDICTED: Mya arenaria integrin beta-1-like (LOC128231151), mRNA blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Mollusca Bivalvia Myida Myidae Mya Mya arenaria
19287939 19287939 PRJNA1022392_P_NODE_49096_length_191_cov_3.701389_g48427_i0 PRJNA1022392 49096 191 3.701389 7.06965299 Bradybaena similaris 145626 Mollusca Mollusca 54.7 0.005   NTclustered gi|2913001816|dbj|AP039609.1| 145626 g48427 i0 90.698 0.225130890052356 43 1 21 3 14 54 1610128 1610169 Bradybaena similaris mixture of YIPCMo001421 and YIPCMo001540 DNA, chromosome 28, sequence blastn 43 54.7 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda Stylommatophora Camaenidae Bradybaena Bradybaena similaris
23956090 23956090 PRJNA1022392_P_NODE_31299_length_206_cov_3.238994_g30630_i0 PRJNA1022392 31299 206 3.238994 6.67232764 Calyptogena 6589 Mollusca Mollusca 56.5 0.001   NTclustered gi|1237088178|dbj|AP014549.1| 43209 g30630 i0 100 0.29126213592233 30 0 15 0 38 67 6740 6769 Calyptogena fausta mitochondrial DNA, partial sequence blastn 60 56.5 1 Eukaryota Opisthokonta Metazoa Mollusca Bivalvia Venerida Vesicomyidae Calyptogena Calyptogena fausta

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;