contig_metadata
11 rows where analysis = "blastn", bioproject = "PRJNA1022392" and tax_kingdom = "Fusobacteriati"
This data as json, CSV (advanced)
| Link | rowid ▼ | query | bioproject | node | length | coverage | rel_abundance | taxname_lca | taxid_lca | taxoncategory | taxoncategorysimple | bits | evalue | lowcoverage_flag | analysis_used | target | taxid | gene | allele | pident | sumperc_cov | alnlen | mismatch | qcov | gapopen | qstart | qend | tstart | tend | target_title | analysis | sumalnlen | maxbits | bits_percmax | tax_superkingdom | tax_clade | tax_kingdom | tax_phylum | tax_class | tax_order | tax_family | tax_genus | tax_species |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 5265202 | 5265202 | PRJNA1022392_P_NODE_58225_length_179_cov_3.484848_g57556_i0 | PRJNA1022392 | 58225 | 179 | 3.484848 | 6.23787792 | Fusobacterium pseudoperiodonticum | 2663009 | Bacteria | Bacteria | 315 | 1.75e-81 | NTclustered | gi|2704959642|gb|CP077196.1| | 2663009 | g57556 | i0 | 98.333 | 2.0111731843575398 | 180 | 2 | 100 | 1 | 1 | 179 | 2101836 | 2102015 | Fusobacterium pseudoperiodonticum strain SB039 chromosome, complete genome | blastn | 360 | 315 | 1 | Bacteria | Fusobacteriati | Fusobacteriota | Fusobacteriia | Fusobacteriales | Fusobacteriaceae | Fusobacterium | Fusobacterium pseudoperiodonticum | ||
| 10365287 | 10365287 | PRJNA1022392_P_NODE_37469_length_204_cov_3.229299_g36800_i0 | PRJNA1022392 | 37469 | 204 | 3.229299 | 6.58776996 | Leptotrichia hofstadii | 157688 | Bacteria | Bacteria | 259 | 9.77e-65 | NTclustered | gi|1708566027|dbj|AP019823.1| | 157688 | g36800 | i0 | 87.736 | 19.7745098039216 | 212 | 18 | 100 | 1 | 1 | 204 | 2484529 | 2484740 | Leptotrichia hofstadii JCM16775 DNA, complete genome | blastn | 4034 | 259 | 1 | Bacteria | Fusobacteriati | Fusobacteriota | Fusobacteriia | Fusobacteriales | Leptotrichiaceae | Leptotrichia | Leptotrichia hofstadii | ||
| 11207049 | 11207049 | PRJNA1022392_P_NODE_27509_length_206_cov_5.213836_g26840_i0 | PRJNA1022392 | 27509 | 206 | 5.213836 | 10.74050216 | Fusobacterium | 848 | Bacteria | Bacteria | 176 | 1.02e-39 | NTclustered | gi|2269773925|gb|CP100429.1| | 76857 | g26840 | i0 | 98.98 | 83.5 | 98 | 1 | 95 | 0 | 1 | 98 | 77890 | 77987 | Fusobacterium polymorphum strain SSMR1 chromosome, complete genome | blastn | 17201 | 176 | 1 | Bacteria | Fusobacteriati | Fusobacteriota | Fusobacteriia | Fusobacteriales | Fusobacteriaceae | Fusobacterium | Fusobacterium polymorphum | ||
| 11207072 | 11207072 | PRJNA1022392_P_NODE_31749_length_206_cov_3.119497_g31080_i0 | PRJNA1022392 | 31749 | 206 | 3.119497 | 6.42616382 | Fusobacterium | 848 | Bacteria | Bacteria | 198 | 2.19e-46 | NTclustered | gi|2704983719|gb|CP077132.1| | 851 | g31080 | i0 | 82.511 | 40.4320388349515 | 223 | 22 | 100 | 9 | 1 | 206 | 1711502 | 1711280 | Fusobacterium nucleatum strain KCOM3208 chromosome, complete genome | blastn | 8329 | 198 | 1 | Bacteria | Fusobacteriati | Fusobacteriota | Fusobacteriia | Fusobacteriales | Fusobacteriaceae | Fusobacterium | Fusobacterium nucleatum | ||
| 11640830 | 11640830 | PRJNA1022392_P_NODE_47010_length_193_cov_3.609589_g46341_i0 | PRJNA1022392 | 47010 | 193 | 3.609589 | 6.96650677 | Fusobacterium polymorphum | 76857 | Bacteria | Bacteria | 183 | 5.6499999999999996e-42 | NTclustered | gi|2706041172|gb|CP056018.1| | 76857 | g46341 | i0 | 100 | 63.139896373057 | 99 | 0 | 99 | 0 | 1 | 99 | 886983 | 887081 | Fusobacterium polymorphum strain SB006 chromosome, complete genome | blastn | 12186 | 183 | 1 | Bacteria | Fusobacteriati | Fusobacteriota | Fusobacteriia | Fusobacteriales | Fusobacteriaceae | Fusobacterium | Fusobacterium polymorphum | ||
| 12482805 | 12482805 | PRJNA1022392_P_NODE_59510_length_178_cov_1.290076_g58841_i0 | PRJNA1022392 | 59510 | 178 | 1.290076 | 2.29633528 | Leptotrichia | 32067 | Bacteria | Bacteria | 324 | 2.89e-84 | NTclustered | gi|285176642|gb|GU415711.1| | 40542 | g58841 | i0 | 99.438 | 111.926966292135 | 178 | 1 | 100 | 0 | 1 | 178 | 7 | 184 | Leptotrichia buccalis clone GT056 16S ribosomal RNA gene, partial sequence | blastn | 19923 | 324 | 1 | Bacteria | Fusobacteriati | Fusobacteriota | Fusobacteriia | Fusobacteriales | Leptotrichiaceae | Leptotrichia | Leptotrichia buccalis | ||
| 12915635 | 12915635 | PRJNA1022392_P_NODE_25791_length_207_cov_4.387500_g25122_i0 | PRJNA1022392 | 25791 | 207 | 4.3875 | 9.082125 | Fusobacterium polymorphum | 76857 | Bacteria | Bacteria | 183 | 6.16e-42 | NTclustered | gi|1208657894|gb|CP021934.1| | 76857 | g25122 | i0 | 100 | 50.5314009661836 | 99 | 0 | 95 | 0 | 109 | 207 | 2006504 | 2006406 | Fusobacterium nucleatum subsp. polymorphum strain KCOM 1260 (=ChDC F218) genome | blastn | 10460 | 183 | 1 | Bacteria | Fusobacteriati | Fusobacteriota | Fusobacteriia | Fusobacteriales | Fusobacteriaceae | Fusobacterium | Fusobacterium polymorphum | ||
| 15464959 | 15464959 | PRJNA1022392_P_NODE_45513_length_194_cov_3.721088_g44844_i0 | PRJNA1022392 | 45513 | 194 | 3.721088 | 7.21891072 | Leptotrichia hongkongensis | 554406 | Bacteria | Bacteria | 248 | 1.99e-61 | NTclustered | gi|1708587163|dbj|AP019846.1| | 554406 | g44844 | i0 | 89.252 | 7.72164948453608 | 214 | 1 | 99 | 1 | 3 | 194 | 2218891 | 2219104 | Leptotrichia hongkongensis JMUB5056 DNA, complete genome | blastn | 1498 | 248 | 1 | Bacteria | Fusobacteriati | Fusobacteriota | Fusobacteriia | Fusobacteriales | Leptotrichiaceae | Leptotrichia | Leptotrichia hongkongensis | ||
| 19287807 | 19287807 | PRJNA1022392_P_NODE_40196_length_196_cov_4.181208_g39527_i0 | PRJNA1022392 | 40196 | 196 | 4.181208 | 8.19516768 | Leptotrichia hofstadii | 157688 | Bacteria | Bacteria | 171 | 4.49e-38 | NTclustered | gi|1708566027|dbj|AP019823.1| | 157688 | g39527 | i0 | 97.959 | 3.96428571428571 | 98 | 2 | 100 | 0 | 1 | 98 | 1229653 | 1229556 | Leptotrichia hofstadii JCM16775 DNA, complete genome | blastn | 777 | 171 | 1 | Bacteria | Fusobacteriati | Fusobacteriota | Fusobacteriia | Fusobacteriales | Leptotrichiaceae | Leptotrichia | Leptotrichia hofstadii | ||
| 21406091 | 21406091 | PRJNA1022392_P_NODE_73417_length_162_cov_2.139130_g72748_i0 | PRJNA1022392 | 73417 | 162 | 2.13913 | 3.4653906 | Leptotrichia | 32067 | Bacteria | Bacteria | 300 | 4.36e-77 | NTclustered | gi|2557559843|gb|CP130323.1| | 3058373 | g72748 | i0 | 100 | 394.827160493827 | 162 | 0 | 100 | 0 | 1 | 162 | 198348 | 198509 | Leptotrichia sp. HMT-225 chromosome, complete genome | blastn | 63962 | 300 | 1 | Bacteria | Fusobacteriati | Fusobacteriota | Fusobacteriia | Fusobacteriales | Leptotrichiaceae | Leptotrichia | Leptotrichia sp. HMT-225 | ||
| 21839080 | 21839080 | PRJNA1022392_P_NODE_47118_length_193_cov_3.226027_g46449_i0 | PRJNA1022392 | 47118 | 193 | 3.226027 | 6.22623211 | Sneathia vaginalis | 187101 | Bacteria | Bacteria | 58.4 | 3.58e-4 | NTclustered | gi|808076794|gb|CP011280.1| | 187101 | g46449 | i0 | 100 | 1.10362694300518 | 31 | 0 | 16 | 0 | 59 | 89 | 877332 | 877362 | Sneathia vaginalis strain SN35 chromosome, complete genome | blastn | 213 | 58.4 | 1 | Bacteria | Fusobacteriati | Fusobacteriota | Fusobacteriia | Fusobacteriales | Leptotrichiaceae | Sneathia | Sneathia vaginalis |
Advanced export
JSON shape: default, array, newline-delimited
CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;