RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA1022392" and tax_clade = "Bacteria candidate phyla"

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tax_superkingdom 1

tax_clade 1

  • Bacteria candidate phyla · 2 ✖

bioproject 1

  • PRJNA1022392 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7814709 7814709 PRJNA1022392_P_NODE_40307_length_196_cov_3.308725_g39638_i0 PRJNA1022392 40307 196 3.308725 6.485101 Candidatus Saccharibacteria bacterium GW2011_GWC2_44_17 1619070 Bacteria Bacteria 69.4 1.68e-7   NTclustered gi|837350690|gb|CP011211.1| 1619070 g39638 i0 80 0.510204081632653 100 14 49 4 1 96 752806 752709 Candidatus Saccharibacteria bacterium GW2011_GWC2_44_17, complete genome blastn 100 69.4 1 Bacteria Bacteria candidate phyla   Candidatus Saccharimonadota         Candidatus Saccharibacteria bacterium GW2011_GWC2_44_17
15465154 15465154 PRJNA1022392_P_NODE_60273_length_177_cov_1.330769_g59604_i0 PRJNA1022392 60273 177 1.330769 2.35546113 Candidatus Nanosynbacter lyticus 2093824 Bacteria Bacteria 202 1.4e-47   NTclustered gi|2869833183|gb|CP175706.1| 2093824 g59604 i0 87.861 1.73446327683616 173 19 97 2 6 177 15474 15303 Candidatus Nanosynbacter lyticus strain BB004 chromosome, complete genome blastn 307 202 1 Bacteria Bacteria candidate phyla   Candidatus Saccharimonadota Candidatus Saccharimonadia Candidatus Nanosynbacterales Candidatus Nanosynbacteraceae Candidatus Nanosynbacter Candidatus Nanosynbacter lyticus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;