RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA1022139" and tax_phylum = "Verrucomicrobiota"

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tax_superkingdom 1

tax_phylum 1

  • Verrucomicrobiota · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1022139 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
10364953 10364953 PRJNA1022139_P_NODE_43129_length_241_cov_0.916667_g43024_i0 PRJNA1022139 43129 241 0.916667 2.20916747 Oleiharenicola sp. Vm1 3398393 Bacteria Bacteria 52.8 0.022   NTclustered gi|2912653302|gb|CP180537.1| 3398393 g43024 i0 100 0.116182572614108 28 0 12 0 123 150 1047000 1047027 Oleiharenicola sp. Vm1 chromosome, complete genome blastn 28 52.8 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales Opitutaceae Oleiharenicola Oleiharenicola sp. Vm1
15464267 15464267 PRJNA1022139_P_NODE_13173_length_373_cov_1.540000_g13068_i0 PRJNA1022139 13173 373 1.54 5.7442 Luteolibacter ambystomatis 2824561 Bacteria Bacteria 80.5 1.63e-10   NTclustered gi|2029343589|gb|CP073100.1| 2824561 g13068 i0 81.188 0.270777479892761 101 17 27 2 14 113 1401465 1401366 Luteolibacter ambystomatis strain 32A chromosome, complete genome blastn 101 80.5 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Luteolibacter Luteolibacter ambystomatis
24387757 24387757 PRJNA1022139_P_NODE_29000_length_270_cov_2.177665_g28895_i0 PRJNA1022139 29000 270 2.177665 5.8796955 Oleiharenicola sp. Vm1 3398393 Bacteria Bacteria 167 8.47e-37   NTclustered gi|2912653302|gb|CP180537.1| 3398393 g28895 i0 77.941 1.00740740740741 272 56 100 4 1 270 1925638 1925369 Oleiharenicola sp. Vm1 chromosome, complete genome blastn 272 167 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales Opitutaceae Oleiharenicola Oleiharenicola sp. Vm1

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;