RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA1022139" and tax_phylum = "Thermodesulfobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Thermodesulfobacteriota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1022139 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1436534 1436534 PRJNA1022139_P_NODE_41122_length_243_cov_0.905882_g41017_i0 PRJNA1022139 41122 243 0.905882 2.20129326 Desulfomicrobium baculatum 899 Bacteria Bacteria 148 2.72e-31   NTclustered gi|256576994|gb|CP001629.1| 525897 g41017 i0 78.151 10.3909465020576 238 48 97 4 1 236 3683026 3682791 Desulfomicrobium baculatum DSM 4028, complete genome blastn 2525 148 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfomicrobiaceae Desulfomicrobium Desulfomicrobium baculatum
4831579 4831579 PRJNA1022139_P_NODE_14024_length_363_cov_2.655172_g13919_i0 PRJNA1022139 14024 363 2.655172 9.63827436 Desulfarculus 453229 Bacteria Bacteria 141 7.14e-29   NTclustered gi|301638057|gb|CP002085.1| 644282 g13919 i0 83.125 35.3911845730028 160 21 42 4 163 316 831033 830874 Desulfarculus baarsii DSM 2075, complete genome blastn 12847 141 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfarculia Desulfarculales Desulfarculaceae Desulfarculus Desulfarculus baarsii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;