RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA1022139" and tax_phylum = "Planctomycetota"

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tax_superkingdom 1

tax_phylum 1

  • Planctomycetota · 4 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1022139 · 4 ✖

analysis 1

  • blastn · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1436339 1436339 PRJNA1022139_P_NODE_1622_length_944_cov_2.443169_g1553_i0 PRJNA1022139 1622 944 2.443169 23.06351536 Limnoglobus roseus 2598579 Bacteria Bacteria 58.4 0.002   NTclustered gi|1733446852|gb|CP042425.1| 2598579 g1553 i0 100 0.0328389830508475 31 0 3 0 896 926 7374488 7374518 Limnoglobus roseus strain PX52 chromosome, complete genome blastn 31 58.4 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Gemmatales Gemmataceae Limnoglobus Limnoglobus roseus
11640189 11640189 PRJNA1022139_P_NODE_24870_length_285_cov_1.452830_g24765_i0 PRJNA1022139 24870 285 1.45283 4.1405655 Planctomyces sp. SH-PL62 1636152 Bacteria Bacteria 52.8 0.026   NTclustered gi|1015454008|gb|CP011273.1| 1636152 g24765 i0 100 0.0982456140350877 28 0 10 0 183 210 2034457 2034430 Planctomyces sp. SH-PL62, complete genome blastn 28 52.8 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Planctomycetales Planctomycetaceae Planctomyces Planctomyces sp. SH-PL62
21838513 21838513 PRJNA1022139_P_NODE_31618_length_260_cov_2.775401_g31513_i0 PRJNA1022139 31618 260 2.775401 7.2160426 Planctomyces sp. SH-PL62 1636152 Bacteria Bacteria 54.7 0.007   NTclustered gi|1015454008|gb|CP011273.1| 1636152 g31513 i0 100 0.111538461538462 29 0 11 0 64 92 271048 271020 Planctomyces sp. SH-PL62, complete genome blastn 29 54.7 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Planctomycetales Planctomycetaceae Planctomyces Planctomyces sp. SH-PL62
22680398 22680398 PRJNA1022139_P_NODE_41018_length_243_cov_0.905882_g40913_i0 PRJNA1022139 41018 243 0.905882 2.20129326 PVC group 1783257 Bacteria Bacteria 52.8 0.022   NTclustered gi|1727537522|gb|CP042911.1| 114 g40913 i0 100 0.460905349794239 28 0 12 0 203 230 4257545 4257572 Gemmata obscuriglobus strain DSM 5831 chromosome, complete genome blastn 112 52.8 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Gemmatales Gemmataceae Gemmata Gemmata obscuriglobus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;