RNAquarium Metadata Server
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contig_metadata

7 rows where analysis = "blastn", bioproject = "PRJNA1022139" and tax_phylum = "Nematoda"

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tax_superkingdom 1

tax_phylum 1

  • Nematoda · 7 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1022139 · 7 ✖

analysis 1

  • blastn · 7 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
10364938 10364938 PRJNA1022139_P_NODE_41869_length_242_cov_0.911243_g41764_i0 PRJNA1022139 41869 242 0.911243 2.20520806 Strongyloides papillosus 174720 Nematoda Nematoda 52.8 0.022   NTclustered gi|690020769|emb|LM528349.1| 174720 g41764 i0 100 0.115702479338843 28 0 12 0 27 54 832 805 Strongyloides papillosus genome assembly S_papillosus_LIN ,scaffold SPAL_contig0002678 blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides papillosus
15464532 15464532 PRJNA1022139_P_NODE_8473_length_453_cov_8.355263_g8368_i0 PRJNA1022139 8473 453 8.355263 37.84934139 Caenorhabditis briggsae 6238 Nematoda Nematoda 220 1.1399999999999997e-52   NTclustered gi|268537031|ref|XM_002633606.1| 6238 g8368 i0 81.25 14.2008830022075 272 51 60 0 82 353 106 377 Caenorhabditis briggsae Protein CBR-RPS-23 (Cbr-rps-23), partial mRNA blastn 6433 220 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis briggsae
16738609 16738609 PRJNA1022139_P_NODE_25114_length_284_cov_1.459716_g25009_i0 PRJNA1022139 25114 284 1.459716 4.14559344 Basiria sp. SAN-2005 345476 Nematoda Nematoda 106 1.98e-18   NTclustered gi|76560642|gb|DQ145667.1| 345476 g25009 i0 94.286 23.3978873239437 70 3 25 1 207 276 905 837 Basiria sp. SAN-2005 28S ribosomal RNA gene, partial sequence blastn 6645 106 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Tylenchidae Basiria Basiria sp. SAN-2005
16738720 16738720 PRJNA1022139_P_NODE_40074_length_244_cov_1.421053_g39969_i0 PRJNA1022139 40074 244 1.421053 3.46736932 Caenorhabditis elegans 6239 Nematoda Nematoda 56.5 0.002   NTclustered gi|687865691|emb|LK927548.1| 6239 g39969 i0 100 0.590163934426229 30 0 12 0 92 121 177346 177317 Caenorhabditis elegans genome assembly C_elegans_Bristol_N2_v1_5_4 ,scaffold CELN2_scaffold0000017 blastn 144 56.5 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
21838581 21838581 PRJNA1022139_P_NODE_39538_length_245_cov_0.895349_g39433_i0 PRJNA1022139 39538 245 0.895349 2.19360505 Strongyloides ratti 34506 Nematoda Nematoda 69.4 2.2e-7   NTclustered gi|1376157481|ref|XM_024646193.1| 34506 g39433 i0 87.097 1.21224489795918 62 6 25 2 168 228 4196 4256 Strongyloides ratti ATP-binding cassette sub-family C member 8 (SRAE_0000031800), partial mRNA blastn 297 69.4 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides ratti
23113832 23113832 PRJNA1022139_P_NODE_14639_length_357_cov_1.855634_g14534_i0 PRJNA1022139 14639 357 1.855634 6.62461338 Pristionchus hoplostomus 1355913 Nematoda Nematoda 167 1.16e-36   NTclustered gi|524845312|gb|KC819366.1| 1355913 g14534 i0 81.166 37.3613445378151 223 28 61 11 133 348 264 49 Pristionchus hoplostomus strain JU1090 subunit ribosomal protein 20 (rps-20) mRNA, partial cds blastn 13338 167 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Neodiplogasteridae Pristionchus Pristionchus hoplostomus
23113919 23113919 PRJNA1022139_P_NODE_25939_length_281_cov_1.850962_g25834_i0 PRJNA1022139 25939 281 1.850962 5.20120322 Pristionchus pauli 376545 Nematoda Nematoda 165 3.19e-36   NTclustered gi|150982019|gb|EF634598.1| 376545 g25834 i0 79.032 2.36654804270463 248 46 87 6 3 247 281 37 Pristionchus pauli large subunit ribosomal protein 23 (rpl-23) mRNA, partial cds blastn 665 165 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Neodiplogasteridae Pristionchus Pristionchus pauli

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;