RNAquarium Metadata Server
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contig_metadata

9 rows where analysis = "blastn", bioproject = "PRJNA1022139" and tax_phylum = "Myxococcota"

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tax_superkingdom 1

tax_phylum 1

  • Myxococcota · 9 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1022139 · 9 ✖

analysis 1

  • blastn · 9 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
161553 161553 PRJNA1022139_P_NODE_17181_length_333_cov_2.688462_g17076_i0 PRJNA1022139 17181 333 2.688462 8.95257846 Myxococcus stipitatus 83455 Bacteria Bacteria 300 1.02e-76   NTclustered gi|2722781719|gb|CP102770.1| 83455 g17076 i0 83.082 39.987987987988 331 54 99 2 4 333 4593907 4593578 Myxococcus stipitatus strain YRE12 chromosome, complete genome blastn 13316 300 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Myxococcaceae Myxococcus Myxococcus stipitatus
1003635 1003635 PRJNA1022139_P_NODE_41281_length_243_cov_0.905882_g41176_i0 PRJNA1022139 41281 243 0.905882 2.20129326 Myxococcaceae 31 Bacteria Bacteria 246 9.36e-61   NTclustered gi|89142973|emb|AM183518.1| 35 g41176 i0 85.532 120.80658436214 235 34 97 0 1 235 75 309 Myxococcus macrosporus partial fusA gene for translation elongation factor G, strain DSM 14697T blastn 29356 246 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Myxococcaceae Corallococcus Corallococcus macrosporus
2712174 2712174 PRJNA1022139_P_NODE_43023_length_241_cov_0.916667_g42918_i0 PRJNA1022139 43023 241 0.916667 2.20916747 Sorangium cellulosum 56 Bacteria Bacteria 56.5 0.002   NTclustered gi|1566495190|gb|CP012670.1| 56 g42918 i0 88 0.20746887966805 50 3 21 2 95 144 6958259 6958213 Sorangium cellulosum strain So ceGT47 chromosome, complete genome blastn 50 56.5 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae Sorangium Sorangium cellulosum
3988265 3988265 PRJNA1022139_P_NODE_32024_length_259_cov_1.408602_g31919_i0 PRJNA1022139 32024 259 1.408602 3.64827918 Phaselicystis flava 525924 Bacteria Bacteria 52.8 0.024   NTclustered gi|1493633220|gb|MH908922.1| 525924 g31919 i0 100 0.108108108108108 28 0 11 0 140 167 76647 76620 Phaselicystis flava strain MSr9315 t3pks biosynthetic gene cluster, complete sequence blastn 28 52.8 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Phaselicystidaceae Phaselicystis Phaselicystis flava
5264664 5264664 PRJNA1022139_P_NODE_4625_length_597_cov_3.919847_g4521_i0 PRJNA1022139 4625 597 3.919847 23.40148659 Nannocystis punicea 2995304 Bacteria Bacteria 357 1.12e-93   NTclustered gi|2415023655|gb|CP114040.1| 2995304 g4521 i0 82.367 70.2445561139028 431 56 71 14 13 438 5377565 5377150 Nannocystis poenicansa strain FL3 chromosome, complete genome blastn 41936 357 1 Bacteria   Pseudomonadati Myxococcota   Nannocystales Nannocystaceae Nannocystis Nannocystis punicea
11640109 11640109 PRJNA1022139_P_NODE_13210_length_373_cov_1.016667_g13105_i0 PRJNA1022139 13210 373 1.016667 3.79216791 Cystobacter fuscus 43 Bacteria Bacteria 52.8 0.035   NTclustered gi|2579665545|gb|CP043492.1| 43 g13105 i0 100 0.0750670241286863 28 0 8 0 6 33 5390363 5390336 Cystobacter fuscus strain Cbf 8 chromosome, complete genome blastn 28 52.8 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Archangiaceae Cystobacter Cystobacter fuscus
20562829 20562829 PRJNA1022139_P_NODE_29917_length_267_cov_1.587629_g29812_i0 PRJNA1022139 29917 267 1.587629 4.23896943 Sorangium cellulosum 56 Bacteria Bacteria 54.7 0.007   NTclustered gi|1338588479|gb|CP012673.1| 56 g29812 i0 100 0.108614232209738 29 0 11 0 211 239 12840856 12840884 Sorangium cellulosum strain So ce26 chromosome, complete genome blastn 29 54.7 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae Sorangium Sorangium cellulosum
23113848 23113848 PRJNA1022139_P_NODE_16939_length_335_cov_2.278626_g16834_i0 PRJNA1022139 16939 335 2.278626 7.6333971 Chondromyces crocatus 52 Bacteria Bacteria 52.8 0.032   NTclustered gi|908353314|gb|CP012159.1| 52 g16834 i0 100 0.0835820895522388 28 0 8 0 279 306 6477854 6477881 Chondromyces crocatus strain Cm c5, complete genome blastn 28 52.8 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae Chondromyces Chondromyces crocatus
23955908 23955908 PRJNA1022139_P_NODE_3379_length_683_cov_4.300000_g3279_i0 PRJNA1022139 3379 683 4.3 29.369 Myxococcaceae 31 Bacteria Bacteria 75 1.45e-8   NTclustered gi|2318731907|gb|CP104804.1| 34 g3279 i0 93.878 1.59590043923865 49 3 7 0 579 627 3114435 3114483 Myxococcus xanthus strain DK1050 chromosome blastn 1090 75 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Myxococcaceae Myxococcus Myxococcus xanthus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;