RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA1022139" and tax_phylum = "Gemmatimonadota"

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tax_superkingdom 1

tax_phylum 1

  • Gemmatimonadota · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1022139 · 2 ✖

analysis 1

  • blastn · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6539730 6539730 PRJNA1022139_P_NODE_10306_length_415_cov_1.535088_g10201_i0 PRJNA1022139 10306 415 1.535088 6.3706152 Longimicrobiales bacterium 2910168 Bacteria Bacteria 52.8 0.04   NTclustered gi|2518596698|emb|OX639991.1| 2910168 g10201 i0 100 0.0674698795180723 28 0 7 0 184 211 3242502 3242529 MAG: Longimicrobiales bacterium isolate affa3490-31b4-448a-b7fc-cc7950b7f85b genome assembly, chromosome: 1 blastn 28 52.8 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Longimicrobiia Longimicrobiales     Longimicrobiales bacterium
6539817 6539817 PRJNA1022139_P_NODE_21706_length_301_cov_1.350877_g21601_i0 PRJNA1022139 21706 301 1.350877 4.06613977 Longimicrobiales bacterium 2910168 Bacteria Bacteria 52.8 0.028   NTclustered gi|2518596698|emb|OX639991.1| 2910168 g21601 i0 100 0.0930232558139535 28 0 9 0 38 65 504173 504146 MAG: Longimicrobiales bacterium isolate affa3490-31b4-448a-b7fc-cc7950b7f85b genome assembly, chromosome: 1 blastn 28 52.8 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Longimicrobiia Longimicrobiales     Longimicrobiales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;