RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA1022139" and tax_phylum = "Chytridiomycota"

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tax_superkingdom 1

tax_phylum 1

  • Chytridiomycota · 4 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1022139 · 4 ✖

analysis 1

  • blastn · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
12915360 12915360 PRJNA1022139_P_NODE_27851_length_274_cov_3.736318_g27746_i0 PRJNA1022139 27851 274 3.736318 10.23751132 Polychytrium aggregatum 110093 Fungi Fungi 58.4 5.41e-4   NTclustered gi|2432152606|ref|XM_053111372.1| 110093 g27746 i0 100 0.226277372262774 31 0 23 0 242 272 345 315 Polychytrium aggregatum uncharacterized protein (BJ171DRAFT_509274), mRNA blastn 62 58.4 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Polychytriales   Polychytrium Polychytrium aggregatum
20129945 20129945 PRJNA1022139_P_NODE_1176_length_1088_cov_2.642365_g1119_i0 PRJNA1022139 1176 1088 2.642365 28.7489312 Eukaryota 2759 Fungi Fungi 802 0   NTclustered gi|2432145256|ref|XM_053110808.1| 110093 g1119 i0 82.105 85.1746323529412 950 158 87 11 131 1074 1800 857 Polychytrium aggregatum hsp71-like protein (BJ171DRAFT_502900), mRNA blastn 92670 802 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Polychytriales   Polychytrium Polychytrium aggregatum
20562816 20562816 PRJNA1022139_P_NODE_27537_length_276_cov_1.137931_g27432_i0 PRJNA1022139 27537 276 1.137931 3.14068956 Polychytrium aggregatum 110093 Fungi Fungi 209 1.42e-49   NTclustered gi|2432132579|ref|XM_053106383.1| 110093 g27432 i0 84.507 76.9601449275362 213 31 77 2 1 212 1466 1677 Polychytrium aggregatum heat shock protein 70 family (BJ171DRAFT_212372), mRNA blastn 21241 209 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Polychytriales   Polychytrium Polychytrium aggregatum
23955909 23955909 PRJNA1022139_P_NODE_339_length_1652_cov_3.694110_g323_i0 PRJNA1022139 339 1652 3.69411 61.0266972 Chytridiomycetes 451435 Fungi Fungi 658 0   NTclustered gi|2432166554|ref|XM_053112251.1| 110093 g323 i0 79.026 57.0805084745763 1006 178 60 24 192 1182 494 1481 Polychytrium aggregatum P-loop containing nucleoside triphosphate hydrolase protein (BJ171DRAFT_518510), mRNA blastn 94297 660 0.996969696969697 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Polychytriales   Polychytrium Polychytrium aggregatum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;