RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA1022139" and tax_phylum = "Bdellovibrionota"

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tax_superkingdom 1

tax_phylum 1

  • Bdellovibrionota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1022139 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
14190173 14190173 PRJNA1022139_P_NODE_12892_length_377_cov_0.868421_g12787_i0 PRJNA1022139 12892 377 0.868421 3.27394717 Peredibacter starrii 28202 Bacteria Bacteria 477 5e-130   NTclustered gi|2631252187|gb|CP139487.1| 28202 g12787 i0 95.623 86.1803713527851 297 13 100 0 81 377 511926 512222 Peredibacter starrii strain A3.12 chromosome, complete genome blastn 32490 477 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae Peredibacter Peredibacter starrii
23113985 23113985 PRJNA1022139_P_NODE_36739_length_248_cov_1.760000_g36634_i0 PRJNA1022139 36739 248 1.76 4.3648 Peredibacter starrii 28202 Bacteria Bacteria 311 3.35e-80   NTclustered gi|2631252187|gb|CP139487.1| 28202 g36634 i0 89.474 86.633064516129 247 25 99 1 1 247 511219 510974 Peredibacter starrii strain A3.12 chromosome, complete genome blastn 21485 311 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae Peredibacter Peredibacter starrii
24387785 24387785 PRJNA1022139_P_NODE_32200_length_258_cov_1.664865_g32095_i0 PRJNA1022139 32200 258 1.664865 4.2953517 Peredibacter sp. HCB2-198 3383025 Bacteria Bacteria 305 1.63e-78   NTclustered gi|2867657404|gb|CP174607.1| 3383025 g32095 i0 88.213 183.232558139535 263 22 100 9 1 258 1292298 1292556 Peredibacter sp. HCB2-198 chromosome, complete genome blastn 47274 305 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae Peredibacter Peredibacter sp. HCB2-198

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;