RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

7 rows where analysis = "blastn", bioproject = "PRJNA1022139" and tax_clade = "Stenosarchaea group"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • Stenosarchaea group · 7 ✖

bioproject 1

  • PRJNA1022139 · 7 ✖

analysis 1

  • blastn · 7 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
161752 161752 PRJNA1022139_P_NODE_5041_length_574_cov_2.179641_g4937_i0 PRJNA1022139 5041 574 2.179641 12.51113934 Halalkaliarchaeum desulfuricum 2055893 Archaea Archaea 67.6 2.02e-6   NTclustered gi|1338053427|gb|CP025066.1| 2055893 g4937 i0 97.436 1.02439024390244 39 1 7 0 503 541 742696 742734 Halalkaliarchaeum desulfuricum strain AArc-Sl chromosome, complete genome blastn 588 67.6 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloferacaceae Halalkaliarchaeum Halalkaliarchaeum desulfuricum
3988412 3988412 PRJNA1022139_P_NODE_8664_length_449_cov_1.406915_g8559_i0 PRJNA1022139 8664 449 1.406915 6.31704835 Halorientalis litorea 2931977 Archaea Archaea 54.7 0.012   NTclustered gi|2225350816|gb|CP095482.1| 2931977 g8559 i0 100 0.0645879732739421 29 0 6 0 113 141 1407013 1407041 Halorientalis litorea strain ZY14 chromosome, complete genome blastn 29 54.7 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloarculaceae Halorientalis Halorientalis litorea
10364870 10364870 PRJNA1022139_P_NODE_32049_length_259_cov_1.274194_g31944_i0 PRJNA1022139 32049 259 1.274194 3.30016246 uncultured haloarchaeon 160804 Archaea Archaea 52.8 0.024   NTclustered gi|915987276|gb|KT322177.1| 160804 g31944 i0 100 0.108108108108108 28 0 11 0 158 185 23017 23044 Uncultured haloarchaeon clone fosmid eHwalsbyiGI1-7 genomic sequence blastn 28 52.8 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Halobacteriaceae   uncultured haloarchaeon
11640298 11640298 PRJNA1022139_P_NODE_36990_length_248_cov_0.880000_g36885_i0 PRJNA1022139 36990 248 0.88 2.1824 Halosimplex aquaticum 3026162 Archaea Archaea 54.7 0.006   NTclustered gi|2446562038|gb|CP118158.1| 3026162 g36885 i0 100 0.229838709677419 29 0 12 0 44 72 2704446 2704474 Halosimplex aquaticum strain XZYJT29 chromosome, complete genome blastn 57 54.7 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloarculaceae Halosimplex Halosimplex aquaticum
18013409 18013409 PRJNA1022139_P_NODE_19055_length_319_cov_2.105691_g18950_i0 PRJNA1022139 19055 319 2.105691 6.71715429 Halarchaeum sp. CBA1220 1853682 Archaea Archaea 54.7 0.008   NTclustered gi|1864271124|gb|CP054708.1| 1853682 g18950 i0 92.308 0.122257053291536 39 2 12 1 140 178 164292 164255 Halarchaeum sp. CBA1220 plasmid pCBA1220-01, complete sequence blastn 39 54.7 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Halobacteriaceae Halarchaeum Halarchaeum sp. CBA1220
19287390 19287390 PRJNA1022139_P_NODE_34416_length_251_cov_0.865169_g34311_i0 PRJNA1022139 34416 251 0.865169 2.17157419 Halococcus dombrowskii 179637 Archaea Archaea 248 2.7e-61   NTclustered gi|2221489803|gb|CP095005.1| 179637 g34311 i0 84.462 8.96812749003984 251 39 100 0 1 251 852175 852425 Halococcus dombrowskii strain H4 chromosome, complete genome blastn 2251 248 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Halococcaceae Halococcus Halococcus dombrowskii
21838383 21838383 PRJNA1022139_P_NODE_14998_length_353_cov_3.492857_g14893_i0 PRJNA1022139 14998 353 3.492857 12.32978521 Halorussus caseinilyticus 3034025 Archaea Archaea 54.7 0.009   NTclustered gi|2463595565|gb|CP119811.1| 3034025 g14893 i0 100 0.328611898016997 29 0 8 0 115 143 42617 42645 Halorussus caseinilyticus strain DT72 plasmid unnamed2, complete sequence blastn 116 54.7 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haladaptataceae Halorussus Halorussus caseinilyticus

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;