RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA1022139" and tax_clade = "Haptista"

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tax_superkingdom 1

tax_phylum 1

tax_clade 1

  • Haptista · 2 ✖

bioproject 1

  • PRJNA1022139 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
10364737 10364737 PRJNA1022139_P_NODE_13949_length_364_cov_1.807560_g13844_i0 PRJNA1022139 13949 364 1.80756 6.5795184 Emiliania huxleyi 2903 Haptophyta other_Eukaryota 287 8.7e-73   NTclustered gi|551557925|ref|XM_005765918.1| 280463 g13844 i0 84.694 60.6291208791209 294 37 80 8 40 329 1573 1862 Emiliania huxleyi CCMP1516 hypothetical protein partial mRNA blastn 22069 287 1 Eukaryota Haptista   Haptophyta   Isochrysidales Noelaerhabdaceae Emiliania Emiliania huxleyi
12915517 12915517 PRJNA1022139_P_NODE_8071_length_464_cov_1.104859_g7966_i0 PRJNA1022139 8071 464 1.104859 5.12654576 Emiliania huxleyi 2903 Haptophyta other_Eukaryota 272 3.1799999999999996e-68   NTclustered gi|551584285|ref|XM_005777484.1| 280463 g7966 i0 82.243 12.7478448275862 321 51 69 6 143 460 901 584 Emiliania huxleyi CCMP1516 hypothetical protein mRNA blastn 5915 272 1 Eukaryota Haptista   Haptophyta   Isochrysidales Noelaerhabdaceae Emiliania Emiliania huxleyi

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;