RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJNA1022139" and tax_clade = "Apusozoa"

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tax_superkingdom 1

tax_clade 1

  • Apusozoa · 6 ✖

bioproject 1

  • PRJNA1022139 · 6 ✖

analysis 1

  • blastn · 6 ✖

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1436441 1436441 PRJNA1022139_P_NODE_28682_length_271_cov_2.878788_g28577_i0 PRJNA1022139 28682 271 2.878788 7.80151548 Thecamonas trahens 529818 Root_unresolved Root_unresolved 134 8.630000000000001e-27   NTclustered gi|923136453|ref|XM_013906238.1| 461836 g28577 i0 83.688 0.774907749077491 141 23 52 0 58 198 290 150 Thecamonas trahens ATCC 50062 50S ribosomal protein L36e (AMSG_01644), partial mRNA blastn 210 134 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens
2711928 2711928 PRJNA1022139_P_NODE_15843_length_346_cov_0.978022_g15738_i0 PRJNA1022139 15843 346 0.978022 3.38395612 Thecamonas trahens 529818 Root_unresolved Root_unresolved 106 2.48e-18   NTclustered gi|923122075|ref|XM_013899054.1| 461836 g15738 i0 85.294 16.121387283237 102 15 29 0 3 104 1543 1644 Thecamonas trahens ATCC 50062 PL10b protein (AMSG_08727), partial mRNA blastn 5578 106 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens
16738665 16738665 PRJNA1022139_P_NODE_3274_length_693_cov_1.700000_g3174_i0 PRJNA1022139 3274 693 1.7 11.781 Thecamonas trahens 529818 Root_unresolved Root_unresolved 324 1.33e-83   NTclustered gi|923134252|ref|XM_013905138.1| 461836 g3174 i0 78.464 19.3376623376623 534 87 75 21 108 624 720 198 Thecamonas trahens ATCC 50062 adenine nucleotide translocator (AMSG_02751), mRNA blastn 13401 324 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens
18013381 18013381 PRJNA1022139_P_NODE_15015_length_353_cov_2.017857_g14910_i0 PRJNA1022139 15015 353 2.017857 7.12303521 Thecamonas trahens 529818 Root_unresolved Root_unresolved 320 8.29e-83   NTclustered gi|923137248|ref|XM_013906635.1| 461836 g14910 i0 83.728 92.9348441926346 338 55 96 0 1 338 1215 1552 Thecamonas trahens ATCC 50062 inositol-3-phosphate synthase (AMSG_00912), mRNA blastn 32806 320 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens
18013651 18013651 PRJNA1022139_P_NODE_815_length_1262_cov_2.507990_g767_i0 PRJNA1022139 815 1262 2.50799 31.6508338 Amastigomonas marina 234594 Root_unresolved Root_unresolved 959 0   NTclustered gi|31982973|gb|AY236711.1| 234594 g767 i0 80.577 95.3058637083994 1282 217 99 22 1 1257 353 1627 Amastigomonas marina heat shock protein 90 (Hsp90) gene, partial cds blastn 120276 959 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Amastigomonas Amastigomonas marina
20562758 20562758 PRJNA1022139_P_NODE_19697_length_315_cov_1.181818_g19592_i0 PRJNA1022139 19697 315 1.181818 3.7227267 Thecamonas trahens 529818 Root_unresolved Root_unresolved 285 2.67e-72   NTclustered gi|923123076|ref|XM_013899554.1| 461836 g19592 i0 83.121 109.552380952381 314 51 99 2 1 313 4278 3966 Thecamonas trahens ATCC 50062 uncharacterized protein (AMSG_12222), partial mRNA blastn 34509 285 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;