RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA1020854" and tax_phylum = "Myxococcota"

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tax_superkingdom 1

tax_phylum 1

  • Myxococcota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1020854 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3987986 3987986 PRJNA1020854_S_NODE_9184_length_445_cov_45.713942_g6478_i0 PRJNA1020854 9184 445 45.713942 203.4270419 Pendulispora brunnea 2905690 Bacteria Bacteria 512 1.64e-140   NTclustered gi|2698055994|gb|CP089982.1| 2905690 g6478 i0 93.143 703.737078651685 350 22 78 2 98 445 7408058 7408407 Pendulispora brunnea strain MSr12523 chromosome, complete genome blastn 313163 512 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Pendulisporaceae Pendulispora Pendulispora brunnea
10364534 10364534 PRJNA1020854_S_NODE_7629_length_540_cov_365.045010_g5002_i0 PRJNA1020854 7629 540 365.04501 1971.243054 Pendulispora brunnea 2905690 Bacteria Bacteria 516 1.5699999999999998e-141   NTclustered gi|2698055994|gb|CP089982.1| 2905690 g5002 i0 89.877 261.862962962963 405 35 74 5 1 401 7408407 7408005 Pendulispora brunnea strain MSr12523 chromosome, complete genome blastn 141406 516 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Pendulisporaceae Pendulispora Pendulispora brunnea

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;