RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA1020854" and tax_phylum = "Kitrinoviricota"

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tax_superkingdom 1

tax_phylum 1

  • Kitrinoviricota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1020854 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2711041 2711041 PRJNA1020854_S_NODE_14123_length_316_cov_743.306620_g11359_i0 PRJNA1020854 14123 316 743.30662 2348.8489192 Bromovirus BMV 3427622 Viruses Viruses 481 3.18e-131   NTclustered gi|2214792991|gb|MW581063.1| 12302 g11359 i0 99.62 130.753164556962 263 1 83 0 48 310 936 1198 Brome mosaic virus isolate BMV-R movement protein and coat protein genes, complete cds blastn 41318 481 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Martellivirales Bromoviridae Bromovirus Bromovirus BMV
6539250 6539250 PRJNA1020854_S_NODE_31206_length_184_cov_2.690323_g28442_i0 PRJNA1020854 31206 184 2.690323 4.95019432 Tobamovirus mititessellati 3432879 Viruses Viruses 320 3.9e-83   NTclustered gi|2523281580|gb|OR082759.1| 12241 g28442 i0 97.849 43.4510869565217 186 2 100 1 1 184 5064 5249 Tobacco mild green mosaic virus isolate DSMZ PV-0110, partial genome blastn 7995 320 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Martellivirales Virgaviridae Tobamovirus Tobamovirus mititessellati
24387287 24387287 PRJNA1020854_S_NODE_41460_length_154_cov_3.232000_g38696_i0 PRJNA1020854 41460 154 3.232 4.97728 Tobamovirus mititessellati 3432879 Viruses Viruses 279 5.33e-71   NTclustered gi|1706846374|gb|MK648158.1| 12241 g38696 i0 99.351 42.987012987013 154 1 100 0 1 154 5442 5289 Tobacco mild green mosaic virus isolate TMGMV-CaJO, complete genome blastn 6620 279 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Martellivirales Virgaviridae Tobamovirus Tobamovirus mititessellati

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;