RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA1020854" and tax_phylum = "Armatimonadota"

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tax_superkingdom 1

tax_phylum 1

  • Armatimonadota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1020854 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3987911 3987911 PRJNA1020854_S_NODE_6724_length_625_cov_1733.033557_g4174_i0 PRJNA1020854 6724 625 1733.033557 10831.45973125 Fimbriimonadales bacterium 2682145 Bacteria Bacteria 313 2.58e-80   NTclustered gi|2314715370|dbj|AP024673.1| 2682145 g4174 i0 83.68 137.328 337 50 53 5 229 562 2615333 2615667 MAG: Fimbriimonadales bacterium KatS3mg018 DNA, complete genome blastn 85830 313 1 Bacteria   Bacillati Armatimonadota Fimbriimonadia Fimbriimonadales     Fimbriimonadales bacterium
16737787 16737787 PRJNA1020854_S_NODE_20734_length_241_cov_3.108491_g17970_i0 PRJNA1020854 20734 241 3.108491 7.49146331 Fimbriimonadales bacterium 2682145 Bacteria Bacteria 78.7 3.58e-10   NTclustered gi|2314715370|dbj|AP024673.1| 2682145 g17970 i0 81.915 0.975103734439834 94 15 39 2 149 241 333819 333727 MAG: Fimbriimonadales bacterium KatS3mg018 DNA, complete genome blastn 235 78.7 1 Bacteria   Bacillati Armatimonadota Fimbriimonadia Fimbriimonadales     Fimbriimonadales bacterium
20561750 20561750 PRJNA1020854_S_NODE_10477_length_399_cov_5.354054_g7736_i0 PRJNA1020854 10477 399 5.354054 21.36267546 Fimbriimonadales bacterium 2682145 Bacteria Bacteria 272 2.6999999999999993e-68   NTclustered gi|2314715370|dbj|AP024673.1| 2682145 g7736 i0 79.31 1.01754385964912 406 71 100 10 1 399 1434263 1433864 MAG: Fimbriimonadales bacterium KatS3mg018 DNA, complete genome blastn 406 272 1 Bacteria   Bacillati Armatimonadota Fimbriimonadia Fimbriimonadales     Fimbriimonadales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;