contig_metadata
7 rows where analysis = "blastn", bioproject = "PRJNA1020854" and tax_phylum = "Acidobacteriota"
This data as json, CSV (advanced)
| Link | rowid ▼ | query | bioproject | node | length | coverage | rel_abundance | taxname_lca | taxid_lca | taxoncategory | taxoncategorysimple | bits | evalue | lowcoverage_flag | analysis_used | target | taxid | gene | allele | pident | sumperc_cov | alnlen | mismatch | qcov | gapopen | qstart | qend | tstart | tend | target_title | analysis | sumalnlen | maxbits | bits_percmax | tax_superkingdom | tax_clade | tax_kingdom | tax_phylum | tax_class | tax_order | tax_family | tax_genus | tax_species |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1435681 | 1435681 | PRJNA1020854_S_NODE_23482_length_221_cov_2733.921875_g20718_i0 | PRJNA1020854 | 23482 | 221 | 2733.921875 | 6041.96734375 | Edaphobacter paludis | 3035702 | Bacteria | Bacteria | 122 | 1.47e-23 | NTclustered | gi|2737763816|gb|CP121194.1| | 3035702 | g20718 | i0 | 80.247 | 196.660633484163 | 162 | 32 | 73 | 0 | 6 | 167 | 1808460 | 1808621 | Edaphobacter paludis strain DSM 109919 chromosome, complete genome | blastn | 43462 | 122 | 1 | Bacteria | Pseudomonadati | Acidobacteriota | Terriglobia | Terriglobales | Acidobacteriaceae | Edaphobacter | Edaphobacter paludis | ||
| 2711189 | 2711189 | PRJNA1020854_S_NODE_20883_length_239_cov_87.409524_g18119_i0 | PRJNA1020854 | 20883 | 239 | 87.409524 | 208.90876236 | Thermoanaerobaculia bacterium | 2651171 | Bacteria | Bacteria | 344 | 3.16e-90 | NTclustered | gi|2874253959|emb|OY970284.1| | 2651171 | g18119 | i0 | 92.827 | 102.970711297071 | 237 | 17 | 99 | 0 | 2 | 238 | 6633857 | 6633621 | MAG: Thermoanaerobaculia bacterium isolate MFD05513.bin.1.42 genome assembly, chromosome: 1 | blastn | 24610 | 344 | 1 | Bacteria | Pseudomonadati | Acidobacteriota | Thermoanaerobaculia | Thermoanaerobaculia bacterium | |||||
| 3553834 | 3553834 | PRJNA1020854_S_NODE_27503_length_199_cov_33.658824_g24739_i0 | PRJNA1020854 | 27503 | 199 | 33.658824 | 66.98105976 | Tunturiibacter | 3154218 | Bacteria | Bacteria | 316 | 5.55e-82 | NTclustered | gi|2304905231|gb|CP073696.1| | 2051959 | g24739 | i0 | 97.814 | 241.336683417085 | 183 | 4 | 92 | 0 | 5 | 187 | 3200303 | 3200121 | Tunturiibacter lichenicola strain DSM 104462 chromosome, complete genome | blastn | 48026 | 316 | 1 | Bacteria | Pseudomonadati | Acidobacteriota | Terriglobia | Terriglobales | Acidobacteriaceae | Tunturiibacter | Tunturiibacter lichenicola | ||
| 6539078 | 6539078 | PRJNA1020854_S_NODE_22366_length_228_cov_2760.547739_g19602_i0 | PRJNA1020854 | 22366 | 228 | 2760.547739 | 6294.04884492 | Granulicella tundricola | 940615 | Bacteria | Bacteria | 305 | 1.41e-78 | NTclustered | gi|321161386|gb|CP002480.1| | 1198114 | g19602 | i0 | 97.753 | 190.995614035088 | 178 | 3 | 78 | 1 | 52 | 228 | 1081595 | 1081772 | Granulicella tundricola MP5ACTX9, complete genome | blastn | 43547 | 305 | 1 | Bacteria | Pseudomonadati | Acidobacteriota | Terriglobia | Terriglobales | Acidobacteriaceae | Granulicella | Granulicella tundricola | ||
| 11206694 | 11206694 | PRJNA1020854_S_NODE_40129_length_157_cov_3.117188_g37365_i0 | PRJNA1020854 | 40129 | 157 | 3.117188 | 4.89398516 | Bacteria | 2 | Bacteria | Bacteria | 224 | 2.5899999999999994e-54 | NTclustered | gi|31789363|gb|AY281352.1| | 171953 | g37365 | i0 | 92.5 | 138.050955414013 | 160 | 6 | 100 | 6 | 1 | 157 | 3938 | 4094 | Uncultured Acidobacteria bacterium clone 23k22 genomic sequence | blastn | 21674 | 224 | 1 | Bacteria | Pseudomonadati | Acidobacteriota | uncultured Acidobacteriota bacterium | ||||||
| 15464097 | 15464097 | PRJNA1020854_S_NODE_7833_length_524_cov_2065.438384_g5190_i0 | PRJNA1020854 | 7833 | 524 | 2065.438384 | 10822.89713216 | Granulicella mallensis | 940614 | Bacteria | Bacteria | 697 | 0 | NTclustered | gi|358750971|gb|CP003130.1| | 682795 | g5190 | i0 | 96.875 | 164.698473282443 | 416 | 13 | 79 | 0 | 55 | 470 | 3185579 | 3185994 | Granulicella mallensis MP5ACTX8 chromosome, complete genome | blastn | 86302 | 697 | 1 | Bacteria | Pseudomonadati | Acidobacteriota | Terriglobia | Terriglobales | Acidobacteriaceae | Granulicella | Granulicella mallensis | ||
| 23113239 | 23113239 | PRJNA1020854_S_NODE_26899_length_202_cov_4.572254_g24135_i0 | PRJNA1020854 | 26899 | 202 | 4.572254 | 9.23595308 | Holophagaceae bacterium | 2052165 | Bacteria | Bacteria | 364 | 1.99e-96 | NTclustered | gi|2689136629|emb|OZ019758.1| | 2052165 | g24135 | i0 | 99.02 | 167.732673267327 | 204 | 0 | 100 | 1 | 1 | 202 | 26968 | 26765 | MAG: Holophagaceae bacterium isolate ZE-13nov19-LR-8 genome assembly, chromosome: 1 | blastn | 33882 | 364 | 1 | Bacteria | Pseudomonadati | Acidobacteriota | Holophagae | Holophagales | Holophagaceae | Holophagaceae bacterium |
Advanced export
JSON shape: default, array, newline-delimited
CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;