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contig_metadata

8 rows where analysis = "blastn", bioproject = "PRJNA1020854" and tax_clade = "core chlorophytes"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • core chlorophytes · 8 ✖

bioproject 1

  • PRJNA1020854 · 8 ✖

analysis 1

  • blastn · 8 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1003464 1003464 PRJNA1020854_S_NODE_39581_length_158_cov_8.317829_g36817_i0 PRJNA1020854 39581 158 8.317829 13.14216982 Jaagichlorella 2304164 Plants Plants 209 7.32e-50   NTclustered gi|478437260|gb|KC470085.1| 445995 g36817 i0 90.506 44.398734177215204 158 15 100 0 1 158 3167 3324 Heveochlorella hainangensis strain SAG 2360 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 26S ribosomal RNA gene, partial sequence blastn 7015 209 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Watanabeales Watanabeaceae Jaagichlorella Jaagichlorella hainangensis
2711236 2711236 PRJNA1020854_S_NODE_23183_length_223_cov_9.510309_g20419_i0 PRJNA1020854 23183 223 9.510309 21.20798907 Trebouxia asymmetrica 13787 Plants Plants 294 2.98e-75   NTclustered gi|1356679026|gb|MH035884.1| 13787 g20419 i0 93.846 79.865470852017907 195 12 87 0 9 203 534 340 Trebouxia asymmetrica isolate C. paramerae Javalambre 2 large subunit ribosomal RNA gene, partial sequence; chloroplast blastn 17810 294 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Trebouxia Trebouxia asymmetrica
2711261 2711261 PRJNA1020854_S_NODE_24303_length_216_cov_393.117647_g21539_i0 PRJNA1020854 24303 216 393.117647 849.13411752 Trebouxia aggregata 160068 Plants Plants 326 1.02e-84   NTclustered gi|162134245|gb|EU123948.1| 160068 g21539 i0 95.567 88.4305555555556 203 9 94 0 14 216 14859 15061 Trebouxia aggregata strain SAG 219-1d ribosomal protein S2 (rps2) gene, complete cds; tRNA-Met (trnMe(cau)) and large subunit ribosomal RNA (rnl) genes, complete sequence; putative site-specific DNA endonuclease (orf365) gene, complete cds; small subunit ribosomal RNA (rns) and tRNA-Met (trnMf(cau)) genes, complete sequence; cytochrome c oxidase subunit 1 (cox1), putative site-specific DNA endonuclease (orf335), and putative site-specific DNA endonuclease (orf256) genes, complete cds; tRNA-Phe (trnF(gaa)) and tRNA-Lys (trnK(uuu)) genes, complete sequence; and apocytochrome b (cob) and putative site-specific DNA endonuclease (orf334) genes, complete cds; mitochondrial blastn 19101 326 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Trebouxia Trebouxia aggregata
7380916 7380916 PRJNA1020854_S_NODE_26086_length_206_cov_5.971751_g23322_i0 PRJNA1020854 26086 206 5.971751 12.30180706 Eukaryota 2759 Plants Plants 377 2.62e-100   NTclustered gi|359385338|emb|FR865755.1| 173490 g23322 i0 100 98.8009708737864 204 0 99 0 1 204 2579 2376 Pseudendocloniopsis botryoides genomic DNA containing 18S rRNA gene, ITS1, 5.8S rRNA gene, ITS2, 28S rRNA gene, culture collection CCAP 465/1 blastn 20353 377 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Ulvophyceae Ulotrichales Planophilaceae Planophila Planophila laetevirens
14189394 14189394 PRJNA1020854_S_NODE_17992_length_265_cov_5.419492_g15228_i0 PRJNA1020854 17992 265 5.419492 14.3616538 Trebouxia sp. ex Placidium sp. PJ-2019a 2571973 Plants Plants 466 7.2999999999999995e-127   NTclustered gi|1691252205|emb|LR586036.1| 2571973 g15228 i0 98.851 98.3358490566038 261 3 98 0 1 261 167 427 Trebouxia sp. ex Placidium sp. PJ-2019a partial 26S rRNA gene, isolate Trebouxia sp. pj16 ex Placidium sp. PJ-2019a blastn 26059 466 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Trebouxia Trebouxia sp. ex Placidium sp. PJ-2019a
16738191 16738191 PRJNA1020854_S_NODE_43074_length_151_cov_1.909836_g40310_i0 PRJNA1020854 43074 151 1.909836 2.88385236 Trebouxia sp. SL0000003 3350044 Plants Plants 139 9.19e-29   NTclustered gi|2917929626|emb|OZ234914.1| 3350044 g40310 i0 97.531 0.947019867549669 81 2 93 0 3 83 1766317 1766397 Trebouxia sp. SL0000003 genome assembly, chromosome: 9 blastn 143 139 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Trebouxia Trebouxia sp. SL0000003
18012776 18012776 PRJNA1020854_S_NODE_28155_length_196_cov_1177.736527_g25391_i0 PRJNA1020854 28155 196 1177.736527 2308.36359292 uncultured Symbiochloris 2562465 Plants Plants 244 2.61e-60   NTclustered gi|2509725906|gb|OR042192.1| 2562465 g25391 i0 96 177.397959183673 150 6 77 0 1 150 1162 1013 Uncultured Symbiochloris clone BW01 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 34770 244 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae       uncultured Symbiochloris
23955581 23955581 PRJNA1020854_S_NODE_23659_length_220_cov_62.010471_g20895_i0 PRJNA1020854 23659 220 62.010471 136.4230362 Trebouxia 13786 Plants Plants 401 1.6799999999999993e-107   NTclustered gi|189909382|gb|EU725860.1| 13787 g20895 i0 99.545 101.568181818182 220 1 100 0 1 220 518 299 Trebouxia asymmetrica strain SAG 48.88 23S large subunit ribosomal RNA (rrnL) gene, partial sequence; chloroplast blastn 22345 401 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Trebouxia Trebouxia asymmetrica

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;