RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA1020854" and tax_clade = "Bacteria candidate phyla"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_clade 1

  • Bacteria candidate phyla · 4 ✖

bioproject 1

  • PRJNA1020854 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1435757 1435757 PRJNA1020854_S_NODE_27642_length_199_cov_2.788235_g24878_i0 PRJNA1020854 27642 199 2.788235 5.54858765 Candidatus Eiseniibacteriota bacterium 2212470 Bacteria Bacteria 139 1.29e-28   NTclustered gi|2874253817|emb|OY969801.1| 2212470 g24878 i0 84.028 15.3266331658291 144 23 72 0 1 144 1374301 1374444 MAG: Candidatus Eisenbacteria bacterium isolate MFD10007.bin.c.4 genome assembly, chromosome: 1 blastn 3050 139 1 Bacteria Bacteria candidate phyla   Candidatus Eiseniibacteriota         Candidatus Eiseniibacteriota bacterium
9088199 9088199 PRJNA1020854_S_NODE_12048_length_356_cov_1534.131498_g9286_i0 PRJNA1020854 12048 356 1534.131498 5461.50813288 Candidatus Nanosynbacter sp. HMT-352 2899133 Bacteria Bacteria 525 1.6499999999999994e-144   NTclustered gi|2218409032|gb|CP089290.1| 2899133 g9286 i0 98.02 46.8539325842697 303 5 85 1 1 302 653357 653659 Candidatus Nanosynbacter sp. HMT-352 strain TM7-001 chromosome blastn 16680 525 1 Bacteria Bacteria candidate phyla   Candidatus Saccharimonadota Candidatus Saccharimonadia Candidatus Nanosynbacterales Candidatus Nanosynbacteraceae Candidatus Nanosynbacter Candidatus Nanosynbacter sp. HMT-352
15463628 15463628 PRJNA1020854_S_NODE_23513_length_221_cov_8.557292_g20749_i0 PRJNA1020854 23513 221 8.557292 18.91161532 Candidatus Saccharibacteria bacterium TM7i 2980174 Bacteria Bacteria 139 1.46e-28   NTclustered gi|2306681518|gb|CP075337.1| 2980174 g20749 i0 80.105 1.23981900452489 191 34 86 4 1 190 382326 382139 Candidatus Saccharibacteria bacterium TM7i chromosome, complete genome blastn 274 139 1 Bacteria Bacteria candidate phyla   Candidatus Saccharimonadota         Candidatus Saccharibacteria bacterium TM7i
19286895 19286895 PRJNA1020854_S_NODE_42596_length_152_cov_2.000000_g39832_i0 PRJNA1020854 42596 152 2 3.04 Candidatus Berkelbacteria bacterium 2053521 Bacteria Bacteria 62.1 2.06e-5   NTclustered gi|1950820483|gb|CP066695.1| 2053521 g39832 i0 88.235 1.84210526315789 51 6 34 0 4 54 767954 768004 Candidatus Berkelbacteria bacterium isolate NC_groundwater_1922_Pr3_S-0.2um_51_5 chromosome blastn 280 62.1 1 Bacteria Bacteria candidate phyla   Candidatus Berkelbacteria         Candidatus Berkelbacteria bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;