RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA1020641" and tax_phylum = "Mycoplasmatota"

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tax_superkingdom 1

tax_phylum 1

  • Mycoplasmatota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1020641 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
160539 160539 PRJNA1020641_P_NODE_6921_length_244_cov_0.900585_g6878_i0 PRJNA1020641 6921 244 0.900585 2.1974274 Mesomycoplasma lagogenitalium 171286 Bacteria Bacteria 52.8 0.022   NTclustered gi|2495165145|gb|CP122979.1| 171286 g6878 i0 100 0.114754098360656 28 0 11 0 40 67 234018 234045 Mesomycoplasma lagogenitalium strain 12MS chromosome, complete genome blastn 28 52.8 1 Bacteria   Bacillati Mycoplasmatota   Mycoplasmoidales Metamycoplasmataceae Mesomycoplasma Mesomycoplasma lagogenitalium
15463309 15463309 PRJNA1020641_P_NODE_6953_length_244_cov_0.865497_g6910_i0 PRJNA1020641 6953 244 0.865497 2.11181268 Mycoplasmopsis meleagridis 29561 Bacteria Bacteria 56.5 0.002   NTclustered gi|2917220006|gb|CP182213.1| 29561 g6910 i0 100 0.245901639344262 30 0 12 0 134 163 423295 423266 Mycoplasmopsis meleagridis strain W24_02583 chromosome blastn 60 56.5 1 Bacteria   Bacillati Mycoplasmatota   Mycoplasmoidales Metamycoplasmataceae Mycoplasmopsis Mycoplasmopsis meleagridis
16737519 16737519 PRJNA1020641_P_NODE_6114_length_248_cov_0.880000_g6071_i0 PRJNA1020641 6114 248 0.88 2.1824 Candidatus Malacoplasma girerdii 1318617 Bacteria Bacteria 219 2.0899999999999994e-52   NTclustered gi|701168938|gb|CP007711.1| 1318617 g6071 i0 85.185 3.56048387096774 216 28 85 4 37 248 91143 91358 Candidatus Mycoplasma girerdii strain VCU_M1, complete genome blastn 883 219 1 Bacteria   Bacillati Mycoplasmatota   Mycoplasmoidales Mycoplasmoidaceae Malacoplasma Candidatus Malacoplasma girerdii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;