RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJNA1020641" and tax_phylum = "Ciliophora"

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tax_superkingdom 1

tax_phylum 1

  • Ciliophora · 6 ✖

tax_clade 1

bioproject 1

  • PRJNA1020641 · 6 ✖

analysis 1

  • blastn · 6 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6538792 6538792 PRJNA1020641_P_NODE_2746_length_369_cov_1.148649_g2703_i0 PRJNA1020641 2746 369 1.148649 4.23851481 Ostracodinium dentatum 358017 SAR_Eukaryotes SAR_Eukaryotes 665 0   NTclustered gi|2643596965|gb|PP067637.1| 358017 g2703 i0 99.187 100.49593495935 369 3 100 0 1 369 2649 2281 Ostracodinium dentatum isolate 07.MDA32 small subunit ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and large subunit ribosomal RNA gene, complete sequence blastn 37083 665 1 Eukaryota Sar   Ciliophora Litostomatea Entodiniomorphida Ophryoscolecidae Ostracodinium Ostracodinium dentatum
11639173 11639173 PRJNA1020641_P_NODE_5310_length_257_cov_0.836957_g5267_i0 PRJNA1020641 5310 257 0.836957 2.15097949 Paramecium caudatum 5885 SAR_Eukaryotes SAR_Eukaryotes 52.8 0.023   NTclustered gi|6630672|dbj|AB035972.1| 196497 g5267 i0 100 0.108949416342412 28 0 11 0 128 155 2065 2092 Paramecium caudatum pap gene for PAP, complete cds blastn 28 52.8 1 Eukaryota Sar   Ciliophora Oligohymenophorea Peniculida Parameciidae Paramecium Paramecium caudatum
12914279 12914279 PRJNA1020641_P_NODE_6431_length_246_cov_0.890173_g6388_i0 PRJNA1020641 6431 246 0.890173 2.18982558 Ostracodinium gracile 358022 SAR_Eukaryotes SAR_Eukaryotes 455 1.4500000000000002e-123   NTclustered gi|2643596966|gb|PP067638.1| 358022 g6388 i0 100 71.7032520325203 246 0 100 0 1 246 3649 3894 Ostracodinium gracile isolate 04.MDA7 small subunit ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and large subunit ribosomal RNA gene, complete sequence blastn 17639 455 1 Eukaryota Sar   Ciliophora Litostomatea Entodiniomorphida Ophryoscolecidae Ostracodinium Ostracodinium gracile
14189201 14189201 PRJNA1020641_P_NODE_2732_length_370_cov_1.037037_g2689_i0 PRJNA1020641 2732 370 1.037037 3.8370369 Entodinium caudatum 47911 SAR_Eukaryotes SAR_Eukaryotes 484 2.929999999999999e-132   NTclustered gi|3172503|gb|AF065249.1|AF065249 47911 g2689 i0 90.27 2.12972972972973 370 36 100 0 1 370 406 37 Entodinium caudatum 14-3-3 protein mRNA, partial cds blastn 788 484 1 Eukaryota Sar   Ciliophora Litostomatea Entodiniomorphida Ophryoscolecidae Entodinium Entodinium caudatum
14189208 14189208 PRJNA1020641_P_NODE_6212_length_248_cov_0.880000_g6169_i0 PRJNA1020641 6212 248 0.88 2.1824 Epidinium ecaudatum 300017 SAR_Eukaryotes SAR_Eukaryotes 219 2.0899999999999994e-52   NTclustered gi|218081353|emb|AM419221.1| 300017 g6169 i0 84.615 1.78225806451613 221 33 89 1 1 221 302 83 Epidinium ecaudatum partial mRNA for cellulase (cmc-04 gene) blastn 442 219 1 Eukaryota Sar   Ciliophora Litostomatea Entodiniomorphida Ophryoscolecidae Epidinium Epidinium ecaudatum
20561737 20561737 PRJNA1020641_P_NODE_6477_length_246_cov_0.890173_g6434_i0 PRJNA1020641 6477 246 0.890173 2.18982558 Ostracodinium gracile 358022 SAR_Eukaryotes SAR_Eukaryotes 315 2.57e-81   NTclustered gi|2253537872|gb|ON513422.1| 358022 g6434 i0 99.422 0.703252032520325 173 1 70 0 74 246 774 602 Ostracodinium gracile strain SAG1 xylanase mRNA, complete cds blastn 173 315 1 Eukaryota Sar   Ciliophora Litostomatea Entodiniomorphida Ophryoscolecidae Ostracodinium Ostracodinium gracile

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;